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Jump to navigationJump to searchEvaluating a Read Mapper on Simulated Data (view source)
Revision as of 18:33, 8 February 2010
, 18:33, 8 February 2010→Available Test Datasets
* Format
* Format
both base space and color space
both base space and color space
both single end and paired end
both single end and paired end, and paired end reads are given insert size 1500.
* Program
* Program (generator)
Usage:
Usage:
delXX: Delete a random XX-length piece for a single read, or at the same position for a paired reads
delXX: Delete a random XX-length piece for a single read, or at the same position for a paired reads
e.g. ./generator bs se exact -n 100 -l 35
e.g. ./generator bs se exact -n 100 -l 35
* Output
Simulation file are named like: BS_SE_EXACT_1000000_35, meaning base space, single end, exact (no polymorphism), 1M reads, 35 bp per read.
For each read, the tag was named in a similar way to Sanger's.
