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Welcome to our brand new wiki!

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For basic instructions, see [[~~basic instructions~~]].

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For basic instructions, see [[http://en.wikipedia.org/wiki/Wikipedia:Tutorial the Wikipedia Tutorial]].

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~~We suggest using your uniqname as your login ID here. Please DO NOT use your umich kerberos password here.~~

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== Sequence Analysis Tools ==

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~~== What Is Available ==~~

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We are developing several tools for the analysis of next generation sequence data.

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~~You have come to the right place for documentation of:~~

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=== Read Mapping ===

[[Karma|Karma]] - Our fast short read aligner

[[Karma-colorspace|Karma-ColorSpace]] - QUICKSTART on mapping color space reads

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=== Variant Calling ===

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[[glfSingle]] - Variant calling for a single, deeply sequenced individual

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[[glfTrio]] - Variant calling for a single, deeply sequence nuclear family with two parents and one child

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[[glfMultiples]] -- Variant calling for multiple, unrelated individuals

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