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MaCH FAQ

124 bytes added, 08:24, 17 November 2011
How do I get reference files for an region of interest?
head -1 orig.hap | wc -w
* Finally(say you got 3 from the above wc -w command. If you got other numbers, replace the 3 in bold below with the number you got):
awk '{print $'''3'''}' orig.hap | cut -c${first}-${last} > region.hap
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