3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Parameters
--maxBaseQual <maxBaseQual> : maximum recalibrated base quality (default: 50)
--maxBaseQual <maxBaseQual> : maximum recalibrated base quality (default: 50)
--blended <weight> : blended model weight
--blended <weight> : blended model weight
--recabLogReg : use logistic regression for calculating the new quality
--useLogReg : use logistic regression for calculating the new quality
--qualField <quality tag> : tag to get the starting base quality (default is to get it from the Quality field
--qualField <quality tag> : tag to get the starting base quality (default is to get it from the Quality field
--storeQualTag <quality tag> : tag to store the previous quality into
--storeQualTag <quality tag> : tag to store the previous quality into
