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Impute females and males separately
 
Impute females and males separately
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minimac  --refHaps chrX.auto.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz --vcfReference --haps females.hap --snps females.snps
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minimac  --refHaps chrX.auto.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz --vcfReference --haps males.hap --snps males.snps
    
== Imputation quality evaluation ==
 
== Imputation quality evaluation ==
550

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