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LibStatGen: FASTQ

6 bytes added, 13:01, 22 February 2010
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*** int minReadLength - The minimum length that a base sequence must be for it to be valid.
*** int maxReportedErrors - The maximum number of errors that should be reported in detail before suppressing the errors.
*'''openFile''' : Open a FastQ File:''' openFile
** Parameters:
*** String filename - fastq file to be opened.
** Return Value
*** FastQStatus: FASTQ_SUCCESS if successfully opened, FASTQ_FAILURE if not.
*'''closeFile''' : Close a FastQ File:''' closeFile
** Parameters: NONE
** Return Value
*** bool: FastQStatus - FASTQ_SUCCESS if successfully closed, FASTQ_FAILURE if not.
*'''isOpen''' : Determine if a FastQ File is open Method:''' isOpen
** Parameters: NONE
** Return Value
*** bool: true if a file is open, false if not.
*'''validateFastQFile''' : Validate an entire FastQ File:''' validateFastQFile
** Parameters:
*** String filename - fastq file to be validated.
** Notes:
*** Invalid information is printed to cout until maxReportedErrors is hit.
*'''readFastQSequence''' : Read a FastQ Sequence From the File:''' readFastQSequence
** Parameters: NONE
** Return Value
** Notes:
*** Invalid information is printed to cout until maxReportedErrors is hit.
*'''getSpaceType''' : Get the Space Type for the File:''' getSpaceType
** Parameters: NONE
** Return Value

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