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88 bytes added, 15:58, 22 February 2010
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*To reduce memory usage, implement a two-pass algorithm that stores only a key for each sequence name (rather than complete sequence names) in memory (suggest a pair of options -1 -> one pass, high memory use, -2 -> two pass lower memory use, default is -1).
*Report average read quality score.
*AutoDetect 64/33 illumina/standard quality scores.