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124 bytes removed, 19:22, 16 November 2012
Other Options
==== Chromosome X ====
* --xStart and --xEnd specifies the start and end of non-pseudo-autosomal regions on chromosome X. These options should be specified when --fitX is used.
==== Other Options ====
* --LDwindow specifies the size of the window to calculate variants LD matrix. The default is 1MB.
=== Handling Unrelated Individuals ===
* To let Rare-Metal-Worker handle unrelated individuals, we just have to code the individuals as unrelated in PED file, or each individual belongs to a unique family. Then Rare-Metal-Worker will take care of the rest.