Changes

From Genome Analysis Wiki
Jump to navigationJump to search

LibStatGen: BAM (view source)

Revision as of 15:28, 16 March 2010

3 bytes removed ,  15:28, 16 March 2010
no edit summary
Line 3: Line 3:  
== Reading/Writing SAM/BAM Files ==
 
== Reading/Writing SAM/BAM Files ==
 
The SamFile class allows a user to easily read/write a SAM/BAM file.
 
The SamFile class allows a user to easily read/write a SAM/BAM file.
−
This methods found in this class are:
+
The methods found in this class are:
 
{| class="wikitable" style="width:100%" border="1"
 
{| class="wikitable" style="width:100%" border="1"
 
|+ style="font-size:150%"|'''SamFile Class Methods'''
 
|+ style="font-size:150%"|'''SamFile Class Methods'''
Line 79: Line 79:  
== Setting fields in a SAM/BAM Header ==
 
== Setting fields in a SAM/BAM Header ==
 
The SamRecord class contains accessors to set the header lines of a SAM/BAM header.  By using these set methods to setup the header, they can be pulled back out using the get accessors or the header can be later written to a SAM/BAM file.   
 
The SamRecord class contains accessors to set the header lines of a SAM/BAM header.  By using these set methods to setup the header, they can be pulled back out using the get accessors or the header can be later written to a SAM/BAM file.   
−
This methods found in the SamFileHeader class for setting fields are:
+
The methods found in the SamFileHeader class for setting fields are:
 
{| class="wikitable" style="width:100%" border="1"
 
{| class="wikitable" style="width:100%" border="1"
 
|+ style="font-size:150%"|'''SamFile Class Methods'''
 
|+ style="font-size:150%"|'''SamFile Class Methods'''
Line 102: Line 102:  
== Setting fields in a SAM/BAM Record ==
 
== Setting fields in a SAM/BAM Record ==
 
The SamRecord class contains accessors to set the fields of a SAM/BAM record.  They are used for creating a record that is not read from a SAM/BAM file.  By using these set methods to setup the record, they can be pulled back out using the get accessors or the record can be later written as either a SAM/BAM record.   
 
The SamRecord class contains accessors to set the fields of a SAM/BAM record.  They are used for creating a record that is not read from a SAM/BAM file.  By using these set methods to setup the record, they can be pulled back out using the get accessors or the record can be later written as either a SAM/BAM record.   
−
This methods found in the SamRecord class for setting fields are:
+
The methods found in the SamRecord class for setting fields are:
 
{| class="wikitable" style="width:100%" border="1"
 
{| class="wikitable" style="width:100%" border="1"
 
|+ style="font-size:150%"|'''SamFile Class Methods'''
 
|+ style="font-size:150%"|'''SamFile Class Methods'''
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/653"

Navigation menu