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LibStatGen: FASTQ

513 bytes added, 09:54, 25 March 2010
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*** int minReadLength - The minimum length that a base sequence must be for it to be valid.
*** int maxReportedErrors - The maximum number of errors that should be reported in detail before suppressing the errors.
*'''disableMessages''' : Disables cout messages. This does not include the Base Composition. Those are turned on/off based on a parameter to validateFastQFile.
** Parameters: NONE
** Return Value: NONE
*'''disableMessages''' : Enables cout messages. This does not include the Base Composition. Those are turned on/off based on a parameter to validateFastQFile.
** Parameters: NONE
** Return Value: NONE
*'''openFile''' : Open a FastQ File
** Parameters:
** Parameters:
*** String filename - fastq file to be validated.
*** bool printBaseComp - whether or not to print the base composition (true = print; false = don't print)
*** BaseAsciiMap::SPACE_TYPE spaceType:
**** BASE_SPACE - Bases only;