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RAREMETAL Command Reference

342 bytes removed, 14:12, 7 August 2013
Describing Input Files
--longOutput, --tabulateHits, --hitsCutoff [1.0e-06]
=== Describing Input Files Studies === SEPARATOR --studyName [WHITESPACE|COMMA|BOTH|TAByour.list.of.studies] (default = WHITESPACE) COLUMNCOUNTING [STRICT|LENIENT] (default = 'STRICT') MARKERLABEL [LABEL] (default = 'MARKER') ALLELELABELS [LABEL1 LABEL2] (default = 'ALLELE1','ALLELE2') EFFECTLABEL [LABEL|log(LABEL)] (default = 'EFFECT') FLIP
Additional details on the [[rareMETAL COLUMNCOUNTINGhttp://genome.sph.umich.edu/wiki/Rare-Metal#List_of_Studies_2|COLUMNCOUNTING--studyName]] and [[rareMETAL EFFECTLABEL|EFFECTLABEL]] options are option is available.
=== Filtering Input Files ===
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