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, 14:27, 7 August 2013
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| === Methods to Group Rare Variants === | | === Methods to Group Rare Variants === |
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− | ADDFILTER [LABEL CONDITION VALUE] (example = ADDFILTER N > 10)
| + | --groupFile [your.groups.file] |
− | (available conditions are <, >, <=, >=, =, !=, IN)
| + | --annotatedVcf [your.annotated.vcf] |
− | REMOVEFILTERS
| + | --annotation [nonsyn/stop/splice] |
| + | --writeVcf [ON|OFF] |
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− | Additional details on these options are [[METAL ADDFILTER|available]]. | + | Additional details on [[Rare-Metal#Grouping_from_a_Group_File|groupFile]], [[Rare-Metal#Grouping_from_an_Annotated_VCF_File|annotatedVcf]] and [[Rare-Metal#Generate_a_VCF_File_to_Annotate_Outside_of_Rare_Metal|writeVcf]] options are available. |
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| === Sample Size Weighted Meta-analysis === | | === Sample Size Weighted Meta-analysis === |