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RAREMETAL Command Reference

130 bytes removed, 14:29, 7 August 2013
Sample Size Weighted Meta-analysis
Additional details on [[Rare-Metal#Grouping_from_a_Group_File|groupFile]], [[Rare-Metal#Grouping_from_an_Annotated_VCF_File|annotatedVcf, annotation]] and [[Rare-Metal#Generate_a_VCF_File_to_Annotate_Outside_of_Rare_Metal|writeVcf]] options are available.
=== Sample Size Weighted Meta-analysis QC Options === WEIGHTLABEL --hwe [LABELhwe.pvalue.cutoff] (default = 'N'1e-05) PVALUELABEL --callRate [LABEL] (default = 'PVALUE') DEFAULTWEIGHT [NUMBERvariant.call.rate.cutoff] (default = 1.0) MINWEIGHT [NUMBER] (default = 1.095)
=== Inverse Variance Weighted Meta-analysis ===
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