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, 20:16, 7 August 2013
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| | SKAT || <math>\mathbf{Q}=\left(\sum_{i=1}^n{\mathbf{U_i^T}}\right) \mathbf{W}\left(\sum_{i=1}^n{\mathbf{U_i}}\right)</math> ||<math>\mathbf{Q}\sim\sum_{i=1}^m{\lambda_i\chi_{1,i}^2},\text{ where}</math> <math>\left(\lambda_1,\lambda_2,\dots,\lambda_m\right)\text{ are eigen values of}</math><math>\left(\sum_{i=1}^n{\mathbf{V_i}}\right)^\frac{1}{2}\mathbf{W}\left(\sum_{i=1}^n{\mathbf{V_i}}\right)^\frac{1}{2}</math> | | | SKAT || <math>\mathbf{Q}=\left(\sum_{i=1}^n{\mathbf{U_i^T}}\right) \mathbf{W}\left(\sum_{i=1}^n{\mathbf{U_i}}\right)</math> ||<math>\mathbf{Q}\sim\sum_{i=1}^m{\lambda_i\chi_{1,i}^2},\text{ where}</math> <math>\left(\lambda_1,\lambda_2,\dots,\lambda_m\right)\text{ are eigen values of}</math><math>\left(\sum_{i=1}^n{\mathbf{V_i}}\right)^\frac{1}{2}\mathbf{W}\left(\sum_{i=1}^n{\mathbf{V_i}}\right)^\frac{1}{2}</math> |
| |} | | |} |
| + | |
| + | == Software Download and Installation == |
| + | * University of Michigan CSG users can go to the following: |
| + | /net/fantasia/home/sfengsph/code/Rare-Metal/raremetal/bin/raremetal |
| + | |
| + | === Where to Download === |
| + | * The software package for Linux and Mac (source code included) can be downloaded here: [[Media:raremetal.0.0.2.tgz|software package download]] |
| + | |
| + | === How to Compile === |
| + | * Save it to your local path and decompress using the following command: |
| + | tar xvzf raremetal.0.0.1.tgz |
| + | * Go to raremetal_0.0.1/raremetal/src and type the following command to compile: |
| + | make |
| + | |
| + | === How to Execute === |
| + | * Go to raremetal_0.0.1/raremetal/bin and use the following: |
| + | ./raremetal |
| + | * For example usage, please refer to [[http://genome.sph.umich.edu/wiki/Rare-Metal#Example_Usage example command lines]] |
| | | |
| == Basic Usage Instructions == | | == Basic Usage Instructions == |