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===Options for Report Generation===
===Options for Report Generation===
* --correctGC generates QQ plots and manhattan plots with pvalues corrected using genomic control.
* --prefix allows customized prefix for output files.
* --prefix allows customized prefix for output files.
* --longOutput allows users to output not only burden test results but also the single variant results (allele frequencies, effect sizes, and p-values) for the variants being grouped together. Please refer to the output files section for detailed explanation and examples.
* --longOutput allows users to output not only burden test results but also the single variant results (allele frequencies, effect sizes, and p-values) for the variants being grouped together. Please refer to the output files section for detailed explanation and examples.
