255
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Geno file
The first and second columns represent the population id and individual id.
The first and second columns represent the population id and individual id.
From the third column, each number represents a genotype.
From the third column, each number represents a genotype.
To be consistent with the sequence data, genotypes should be given on the '''forward strand'''. Genotypes are coded by 0, 1, or 2, representing copies of the
reference allele at a locus in one individual.
In this geno file, we have 632,960 columns which contains 632,958 markers from column 3 to the last column.
In this geno file, we have 632,960 columns which contains 632,958 markers from column 3 to the last column.
