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Revision as of 01:25, 24 November 2013
, 01:25, 24 November 2013no edit summary
# PVALUE P-value
# PVALUE P-value
=== RAREMETALWORKER ===
=== RAREMETALWORKER Example ===
RAREMETALWORKER generates prefix.traitName.singlevar.score.txt, e.g. prefix.HDL.singlevar.score.txt
RAREMETALWORKER generates prefix.traitName.singlevar.score.txt, e.g. prefix.HDL.singlevar.score.txt
1 565111 T C 2778 0.0170986 0.0170986 95 1 4.19613e-102 2730 1 47 24.0897 13.6258 0.129688 0.0770708
1 565111 T C 2778 0.0170986 0.0170986 95 1 4.19613e-102 2730 1 47 24.0897 13.6258 0.129688 0.0770708
=== Rvtests ===
=== Rvtests Example ===
Rvtests generates prefix.MetaScore.assoc, e.g. prefix.MetaScore.assoc
Rvtests generates prefix.MetaScore.assoc, e.g. prefix.MetaScore.assoc
# COV (rvtests only) Covariance matrix between test statistics
# COV (rvtests only) Covariance matrix between test statistics
=== RAREMETALWORKER ===
=== RAREMETALWORKER Example ===
RAREMETALWORKER generates prefix.traitName.singlevar.cov.txt, e.g. prefix.HDL.singlevar.cov.txt
RAREMETALWORKER generates prefix.traitName.singlevar.cov.txt, e.g. prefix.HDL.singlevar.cov.txt
1 878744 878744,879381,1560000,1864659,1877659 0.000404537,-0.000235215,-1.4455e-05,-8.69137e-06,-3.1027e-05,
1 878744 878744,879381,1560000,1864659,1877659 0.000404537,-0.000235215,-1.4455e-05,-8.69137e-06,-3.1027e-05,
=== Rvtests ===
=== Rvtests Example ===
Rvtests generates prefix.MetaCov.assoc.gz, e.g. prefix.HDL.MetaCov.assoc.gz
Rvtests generates prefix.MetaCov.assoc.gz, e.g. prefix.HDL.MetaCov.assoc.gz
Later version of rvtests will also generate tabix index file, prefix.MetaCov.assoc.gz
Later version of rvtests will also generate tabix index file, prefix.MetaCov.assoc.gz
