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, 03:31, 6 January 2014
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| * Configuration File - See the example configuration file below. | | * Configuration File - See the example configuration file below. |
− | % cat $S5/examples/index/chr7.CFTR.align.conf� | + | % cat $S5/examples/index/chr7.CFTR.align.conf |
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− | �INDEX_FILE = index/chr7.CFTR.fastq.index | + | INDEX_FILE = index/chr7.CFTR.fastq.index |
| ################### | | ################### |
| # References | | # References |
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| Default options should be mostly fine in many other cases. In this example, because it is not genome-wide calling, reference files are modified to be chr7-specific | | Default options should be mostly fine in many other cases. In this example, because it is not genome-wide calling, reference files are modified to be chr7-specific |
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| === Run GotCloud Alignment Pipeline === | | === Run GotCloud Alignment Pipeline === |