From Genome Analysis Wiki
Jump to navigationJump to search
828 bytes added
, 17:18, 28 February 2014
Line 93: |
Line 93: |
| To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_x.x.x directory and type make all. | | To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_x.x.x directory and type make all. |
| | | |
− | * [[Media:BamUtil.1.0.10.tar.gz|BamUtil.1.0.10.tar.gz]] - Released 1/2/2014 | + | * [[Media:BamUtil.1.0.11.tgz|BamUtil.1.0.11.tgz]] - Released 2/28/2014 |
| | | |
| '''BamUtil.1.0.10 Release Notes''' | | '''BamUtil.1.0.10 Release Notes''' |
| + | * [[Media:BamUtil.1.0.11.tgz|BamUtil.1.0.11.tgz]] - Released 2/28/2014 |
| + | ** Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.11]] |
| + | ** Update [[BamUtil: splitBam|splitBam]] & [[BamUtil: polishBam|polishBam]] |
| + | *** Update to work properly if log & output file are not specified (no longer creates '.log') |
| + | ** Update Main dummy/example tool to indicate the correct tool |
| + | ** Update to [[BamUtil: bam2FastQ|bam2FastQ]], [[BamUtil: clipOverlap|clipOverlap]], [[BamUtil: filter|filter]], [[BamUtil: mergeBam|mergeBam]], [[BamUtil: splitBam|splitBam]], [[BamUtil: squeeze|squeeze]], [[BamUtil: stats|stats]] |
| + | *** Cleanup usage/parameter descriptions |
| + | ** Update [[BamUtil: revert|revert]] |
| + | *** Update compatibility with libStatGen due to 'B' & 'f' tag handling updates |
| + | ** Add tests for 'B' & 'f' tags |
| + | |
| + | |
| + | '''Older Releases''' |
| + | |
| * [[Media:BamUtil.1.0.10.tar.gz|BamUtil.1.0.10.tar.gz]] - Released 1/2/2014 | | * [[Media:BamUtil.1.0.10.tar.gz|BamUtil.1.0.10.tar.gz]] - Released 1/2/2014 |
| ** Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.10]] | | ** Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.10]] |
Line 124: |
Line 138: |
| *** add more informative header merge error messages | | *** add more informative header merge error messages |
| | | |
− |
| |
− | '''Older Releases'''
| |
| * [[Media:BamUtil.1.0.9.tgz|BamUtil.1.0.9.tgz]] - Released 7/7/2013 | | * [[Media:BamUtil.1.0.9.tgz|BamUtil.1.0.9.tgz]] - Released 7/7/2013 |
| ** Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.9]] (version 1.0.7 should also work) | | ** Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.9]] (version 1.0.7 should also work) |