Changes

=== Quality Control Utilities ===

=== Quality Control Utilities ===

[[FastQ Validator]] -- Check that a FASTQ file conforms to specification.

[[C++ Executable: fastQValidator|FastQValidator]] -- Check that a FASTQ file conforms to specification.

[[BamIdentityCheck]] -- Check that mapped reads are consistent with known genotypes for each individual.

[[BamIdentityCheck]] -- Check that mapped reads are consistent with known genotypes for each individual.

=== File Readers ===

=== File Readers ===

[[BamFile]] -- Reads a BAM/SAM file.   

[[C++ Library: libbam|BamFile]] -- Reads a BAM/SAM file.   

[[FastQFile]] -- Read a FASTQ file sequence by sequence.  Validating the sequence as it is read.

[[C++ Library: libfqf|FastQFile]] -- Read a FASTQ file sequence by sequence.  Validating the sequence as it is read.

=== File Conversion ===

=== File Conversion ===