Open main menu

Genome Analysis Wiki β



12 bytes removed, 09:08, 28 March 2014
error: BGZF EOF marker is missing in reffhsexome_v2.vcf.gz
If you are using version 0.4.4 and under, please go to our wiki page to download the newest version [[[RAREMETAL]]]. There was a bug in makefile in older versions of RAREMETAL that could cause this error and it has been fixed. For a quick fix, please go to /raremetal/src and open "Makefile". Then comment out the lines at the bottom of raremetal/src/Makefile that set LD_LIBRARY_PATH. Try compiling and see if it works.
===error: BGZF EOF marker is missing in reffhsexome_v2xxx.vcf.gz===
Loading input files...
Loading DAT files ... done.
This problem has been solved. If you are using version 0.4.5 or older, please download the newest version [[[RAREMETALWORKER]]], and then in your command line, add --noeof. If you still see the error message, then you need to check if your bgzip has been updated to current version.