Popular pages

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  1. Main Page‏‎ (1,190,353 views)
  2. SAM‏‎ (406,540 views)
  3. Minimac‏‎ (386,282 views)
  4. Vt‏‎ (377,319 views)
  5. EPACTS‏‎ (296,982 views)
  6. Abecasis Lab‏‎ (266,243 views)
  7. METAL Documentation‏‎ (251,198 views)
  8. Biostatistics 666: Main Page‏‎ (224,296 views)
  9. BamUtil‏‎ (222,686 views)
  10. LiftOver‏‎ (222,614 views)
  11. RAREMETALWORKER‏‎ (211,793 views)
  12. VerifyBamID‏‎ (210,606 views)
  13. Installing MinGW & MSYS on Windows‏‎ (200,910 views)
  14. Polymutt‏‎ (199,500 views)
  15. LocusZoom Standalone‏‎ (195,346 views)
  16. Variant Normalization‏‎ (194,281 views)
  17. Minimac3‏‎ (179,296 views)
  18. BAM‏‎ (178,095 views)
  19. RAREMETAL Documentation‏‎ (173,115 views)
  20. GotCloud‏‎ (145,558 views)
  21. FastQValidator‏‎ (139,740 views)
  22. Biostatistics 602: Main Page‏‎ (138,371 views)
  23. IMPUTE2: 1000 Genomes Imputation Cookbook‏‎ (125,674 views)
  24. Exome Chip Design‏‎ (121,450 views)
  25. QPLOT‏‎ (119,921 views)
  26. LocusZoom‏‎ (118,120 views)
  27. MaCH‏‎ (115,712 views)
  28. Minimac: 1000 Genomes Imputation Cookbook‏‎ (111,172 views)
  29. Biostatistics 615/815: Main Page‏‎ (110,954 views)
  30. Code Sample: Generating Manhattan Plots in R‏‎ (101,005 views)
  31. EMADS‏‎ (100,495 views)
  32. DosageConvertor‏‎ (99,405 views)
  33. VcfCodingSnps‏‎ (98,608 views)
  34. Biostatistics 830: Main Page‏‎ (95,468 views)
  35. Minimac4‏‎ (94,648 views)
  36. Tutorial: Low Pass Sequence Analysis‏‎ (94,308 views)
  37. Tutorial: GotCloud‏‎ (91,938 views)
  38. Software‏‎ (91,567 views)
  39. EMMAX‏‎ (88,602 views)
  40. RAREMETAL‏‎ (87,275 views)
  41. Variant classification‏‎ (87,054 views)
  42. Mapping Quality Scores‏‎ (84,753 views)
  43. METAL‏‎ (83,773 views)
  44. RareMETALS‏‎ (82,101 views)
  45. Famrvtest‏‎ (81,909 views)
  46. SeqShop: Calling Your Own Genome, December 2014‏‎ (81,564 views)
  47. Minimac2‏‎ (80,473 views)
  48. METAL Quick Start‏‎ (79,839 views)
  49. Triodenovo‏‎ (77,102 views)
  50. MaCH FAQ‏‎ (74,917 views)
  51. TrioCaller‏‎ (73,045 views)
  52. C++ Library: libStatGen‏‎ (71,685 views)
  53. LASER‏‎ (71,075 views)
  54. SardiNIA‏‎ (70,641 views)
  55. UMAKE‏‎ (69,351 views)
  56. Minimac3 Imputation Cookbook‏‎ (65,972 views)
  57. Biostatistics 866: Main Page‏‎ (62,837 views)
  58. GREGOR‏‎ (62,724 views)
  59. Minimac3 Info File‏‎ (61,795 views)
  60. EMADS Primary Analysis Plan‏‎ (60,825 views)
  61. SNP Call Set Properties‏‎ (59,419 views)
  62. RAREMETAL DOWNLOAD & BUILD‏‎ (59,005 views)
  63. Code Sample: Generating QQ Plots in R‏‎ (57,868 views)
  64. Thunder‏‎ (56,206 views)
  65. GotCloud: Variant Calling Pipeline‏‎ (55,916 views)
  66. SeqShop: Calling Your Own Genome, May 2015‏‎ (55,608 views)
  67. EPACTS for DIAGRAM‏‎ (55,349 views)
  68. SEQMIX‏‎ (54,254 views)
  69. LibStatGen: BAM‏‎ (52,865 views)
  70. RAREMETALWORKER METHOD‏‎ (52,612 views)
  71. GotCloud: Binary Releases‏‎ (52,581 views)
  72. BamUtil: trimBam‏‎ (52,528 views)
  73. BamUtil: bam2FastQ‏‎ (52,394 views)
  74. BamUtil: stats‏‎ (52,385 views)
  75. BamUtil: validate‏‎ (52,139 views)
  76. Rvtests‏‎ (50,185 views)
  77. BamUtil: dedup‏‎ (49,688 views)
  78. Biostatistics 615/815 Fall 2011‏‎ (49,139 views)
  79. Tutorial: RAREMETAL‏‎ (48,317 views)
  80. SeqShop: Analysis of Structural Variation Practical, June 2014‏‎ (48,177 views)
  81. LibStatGen: FASTQ‏‎ (46,971 views)
  82. RvTests‏‎ (46,927 views)
  83. LibStatGen Download‏‎ (46,052 views)
  84. Generic Exome Analysis Plan‏‎ (45,968 views)
  85. SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014‏‎ (44,663 views)
  86. GlfMultiples‏‎ (44,048 views)
  87. FTEC‏‎ (43,731 views)
  88. GotCloud: Alignment Pipeline‏‎ (43,702 views)
  89. RAREMETAL METHOD‏‎ (41,872 views)
  90. BamUtil: clipOverlap‏‎ (41,858 views)
  91. Short Workshops‏‎ (41,809 views)
  92. SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014‏‎ (40,896 views)
  93. SeqShop: Analysis of Structural Variation Practical, December 2014‏‎ (40,678 views)
  94. VcfCooker‏‎ (39,528 views)
  95. Minimac3 Usage‏‎ (38,722 views)
  96. Creating an AMI on EC2‏‎ (37,188 views)
  97. RareMETALS2‏‎ (36,793 views)
  98. Bam read count‏‎ (36,366 views)
  99. GotCloud: Genetic Reference and Resource Files‏‎ (36,115 views)
  100. Relationship between Ploidy, Alleles and Genotypes‏‎ (36,016 views)
  101. Rare variant tests‏‎ (35,905 views)
  102. SeqShop: Estimates of Genetic Ancestry Practical, December 2014‏‎ (35,412 views)
  103. ExomePicks‏‎ (35,384 views)
  104. Arf‏‎ (35,375 views)
  105. SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015‏‎ (35,315 views)
  106. SeqShop: Sequence Mapping and Assembly Practical, June 2014‏‎ (35,128 views)
  107. BamUtil: writeRegion‏‎ (34,966 views)
  108. SeqShop: Sequence Mapping and Assembly Practical, December 2014‏‎ (34,277 views)
  109. BamUtil: convert‏‎ (34,272 views)
  110. RAREMETALWORKER command reference‏‎ (34,194 views)
  111. Karma‏‎ (33,571 views)
  112. GlfSingle‏‎ (33,425 views)
  113. MEAGA‏‎ (33,422 views)
  114. SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014‏‎ (33,249 views)
  115. BamUtil: diff‏‎ (33,248 views)
  116. BamUtil: filter‏‎ (32,412 views)
  117. GTDT‏‎ (31,911 views)
  118. METAL Command Reference‏‎ (31,833 views)
  119. SeqShop: May 2015‏‎ (31,760 views)
  120. SeqShop: Sequence Mapping and Assembly Practical, May 2015‏‎ (31,581 views)
  121. SeqShop: Estimates of Genetic Ancestry Practical, June 2014‏‎ (30,962 views)
  122. StarCluster‏‎ (30,861 views)
  123. GotCloud: Alignment Sub-Pipelines‏‎ (30,142 views)
  124. BamUtil: recab‏‎ (29,854 views)
  125. MaCH: 1000 Genomes Imputation Cookbook‏‎ (29,512 views)
  126. Shuang Feng‏‎ (29,119 views)
  127. BamGenotypeCheck‏‎ (28,984 views)
  128. BAFRegress‏‎ (28,371 views)
  129. RAREFY COMMAND‏‎ (28,174 views)
  130. ChunkChromosome‏‎ (28,027 views)
  131. Amazon Snapshot‏‎ (27,738 views)
  132. GLF‏‎ (27,154 views)
  133. Polymutt2‏‎ (27,071 views)
  134. Abecasis Group Awards‏‎ (26,710 views)
  135. Minimac: Tutorial‏‎ (26,252 views)
  136. RAREFY‏‎ (26,186 views)
  137. SeqShop: Analysis of Structural Variation Practical, May 2015‏‎ (26,069 views)
  138. Releasing GotCloud‏‎ (25,862 views)
  139. GotCloud: Versions‏‎ (25,841 views)
  140. SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015‏‎ (25,722 views)
  141. Rare Variant Analysis and Meta-Analysis‏‎ (25,149 views)
  142. Bar Harbor Statistical Genetics Workshop‏‎ (24,890 views)
  143. SeqShop: December 2014‏‎ (24,640 views)
  144. Evaluating a Read Mapper on Simulated Data‏‎ (24,310 views)
  145. SeqShop: Ancestry On Your Own Genome, December 2014‏‎ (24,307 views)
  146. Class Notes‏‎ (24,303 views)
  147. C++ Class: SamFile‏‎ (24,242 views)
  148. BamUtil: mergeBam‏‎ (23,985 views)
  149. SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014‏‎ (23,893 views)
  150. CSG Tech Talks‏‎ (23,865 views)
  151. How To Use Git‏‎ (23,792 views)
  152. BamUtil: polishBam‏‎ (23,168 views)
  153. SeqShop: Genetic Association Analysis Practical, December 2014‏‎ (23,056 views)
  154. Regions of high linkage disequilibrium (LD)‏‎ (23,014 views)
  155. SAM Validation Criteria‏‎ (22,943 views)
  156. Using Git Example‏‎ (22,528 views)
  157. Vmatch‏‎ (22,276 views)
  158. GotCloud: FAQs‏‎ (21,771 views)
  159. RAREMETAL Change Log‏‎ (21,698 views)
  160. Base Caller Summaries‏‎ (21,575 views)
  161. RAREMETAL FAQ‏‎ (21,473 views)
  162. RAREFY DOCUMENTATION‏‎ (21,253 views)
  163. Creating a Snapshot on EC2‏‎ (20,970 views)
  164. Minimac3 Cookbook : Converting Files to VCF‏‎ (20,963 views)
  165. Power Calculations: Quantitative Traits‏‎ (20,836 views)
  166. Karma-colorspace‏‎ (20,739 views)
  167. BamUtil: splitBam‏‎ (20,453 views)
  168. Tutorial: GotCloud UW CMG‏‎ (20,307 views)
  169. Minimac Command Reference‏‎ (19,914 views)
  170. Biostatistics 830 - Code Snippets‏‎ (19,874 views)
  171. BAM Review Action Items‏‎ (19,821 views)
  172. SeqShop: Aligning Your Own Genome, December 2014‏‎ (19,624 views)
  173. Verifying Sample Identities - Implementation‏‎ (19,475 views)
  174. GotCloud: GenomeSTRiP Pipeline‏‎ (19,087 views)
  175. Minimac3 ChangeLog‏‎ (19,072 views)
  176. Minimac4 Documentation‏‎ (19,069 views)
  177. New Fugue‏‎ (18,882 views)
  178. Make file tutorial‏‎ (18,875 views)
  179. Git FAQs‏‎ (18,801 views)
  180. SeqShop: June 2014‏‎ (18,789 views)
  181. METAL FAQ‏‎ (18,765 views)
  182. SeqShop: Ancestry On Your Own Genome, May 2015‏‎ (18,749 views)
  183. Genezoom‏‎ (18,517 views)
  184. Indel‏‎ (18,468 views)
  185. Minimac3 Cookbook : Chromosome X Imputation‏‎ (17,942 views)
  186. RAREMETAL Command Reference‏‎ (17,854 views)
  187. GotCloud: Creating a New Pipeline‏‎ (17,711 views)
  188. Sequence Analysis Practice 2011/03/09‏‎ (17,708 views)
  189. Introduction to new students‏‎ (17,625 views)
  190. Goncalo Abecasis‏‎ (17,430 views)
  191. Minimac3 Examples‏‎ (17,326 views)
  192. Mach2dat: Association with MACH output‏‎ (17,324 views)
  193. SeqShop: Genetic Association Analysis Practical, June 2014‏‎ (17,154 views)
  194. Biostatistics 666: Rare Variant Burden Tests‏‎ (17,146 views)
  195. Amazon Storage‏‎ (17,092 views)
  196. LibStatGen: VCF‏‎ (17,076 views)
  197. GlfTrio‏‎ (16,933 views)
  198. Tutorial: EMMAX GotCloud STOM‏‎ (16,893 views)
  199. VerifyIDintensity‏‎ (16,825 views)
  200. GotCloud: Amazon Demo‏‎ (16,665 views)
  201. Summary Statistics Files Specification for RAREMETAL and rvtests‏‎ (16,558 views)
  202. Debuggers‏‎ (16,404 views)
  203. Basic Linux Intro‏‎ (16,276 views)
  204. LibStatGen Troubleshooting‏‎ (16,024 views)
  205. VICES‏‎ (15,924 views)
  206. Sean Caron‏‎ (15,672 views)
  207. NHLBI Informatics Resource‏‎ (15,656 views)
  208. MaCH: Input Files‏‎ (15,366 views)
  209. Understanding vcf-summary output‏‎ (15,300 views)
  210. LibStatGen: ASP‏‎ (15,098 views)
  211. M3VCF Files‏‎ (14,945 views)
  212. Examples of Read Mapping with Karma and BWA‏‎ (14,816 views)
  213. TabAnno‏‎ (14,791 views)
  214. C++ Class: CigarRoller‏‎ (14,745 views)
  215. MaCH: machX‏‎ (14,548 views)
  216. SplitPed‏‎ (14,399 views)
  217. CalcMatch‏‎ (14,364 views)
  218. RelativeFinder‏‎ (14,324 views)
  219. RAREFY DOWNLOAD‏‎ (14,309 views)
  220. Dajiang Liu‏‎ (14,117 views)
  221. RAREMETALWORKER SPECIAL TOPICS‏‎ (14,074 views)
  222. BamUtil: splitChromosome‏‎ (13,965 views)
  223. Computer How-Tos‏‎ (13,850 views)
  224. GotCloud: Source Releases‏‎ (13,780 views)
  225. 1000 Genomes Project Pilot 1 SNP Calling‏‎ (13,744 views)
  226. BamUtil: squeeze‏‎ (13,734 views)
  227. Understanding VerifyBamID output‏‎ (13,724 views)
  228. LibStatGen: general‏‎ (13,687 views)
  229. Mach DAC‏‎ (13,620 views)
  230. Haploxt‏‎ (13,456 views)
  231. Tutorial: Low Pass Sequence Analysis Answers‏‎ (13,407 views)
  232. Stouffer Method for Meta-Analysis‏‎ (13,196 views)
  233. ContaminationDetection‏‎ (13,175 views)
  234. RAREFY TUTORIAL‏‎ (13,109 views)
  235. GotCloud: Variant Calling Options‏‎ (13,102 views)
  236. Phred scale‏‎ (12,992 views)
  237. Samtools-hybrid‏‎ (12,969 views)
  238. LiftMap.py‏‎ (12,923 views)
  239. CheckVCF.py‏‎ (12,839 views)
  240. C++ Class: SamFileHeader‏‎ (12,832 views)
  241. Pileup‏‎ (12,720 views)
  242. Biostatistics 666: Linkage Disequilibrium‏‎ (12,606 views)
  243. BamUtil: revert‏‎ (12,484 views)
  244. Genotype Likelihood based Allele Frequency‏‎ (12,362 views)
  245. MutationFilter‏‎ (12,341 views)
  246. Minimac3 - Full List of Options‏‎ (12,268 views)
  247. FastQ Validation Criteria‏‎ (12,219 views)
  248. Raremetal Incoming updates‏‎ (12,090 views)
  249. Test EPACTS for DIAGRAM‏‎ (12,079 views)
  250. Genotype Likelihood Based Allele Balance‏‎ (11,951 views)

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