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  • Ben Lerch
    Ben Lerch is a biostatistics master’s student working for [[Goncalo Abecasis]]. He earned his B.A. in biology from Reed College in 2013.
    174 bytes (28 words) - 12:21, 27 June 2013
  • Abecasis Group Awards
    == Goncalo's Awards ==
    3 KB (339 words) - 18:01, 23 July 2014
  • Sara Rashkin
    Sara is a PhD student working with [[Goncalo Abecasis]] in developing methods for copy number variation detection and is
    425 bytes (60 words) - 12:18, 27 June 2013
  • Scott Vrieze
    ...Investigator in the Department of Biostatistics. Scott collaborates with [[Goncalo Abecasis]] to investigate the genetic etiology and architecture of substanc
    645 bytes (96 words) - 08:16, 4 October 2013
  • Alan Kwong
    Alan is a Ph.D. student working with Dr. [[Goncalo Abecasis | Gonçalo Abecasis]] in researching new methods for next-generati
    608 bytes (87 words) - 22:45, 22 January 2016
  • Jennifer Bragg-Gresham
    ...miology at the University of Michigan and is currently a staff member with Goncalo Abecasis. Jennifer's main interest is in understanding better the role gene
    635 bytes (96 words) - 09:18, 18 June 2013
  • Dajiang Liu
    ...ost-doc research fellowship, working on rare variant analysis methods with Goncalo Abecasis. Previously, he obtained his Ph.D. at Rice University working with
    544 bytes (76 words) - 13:30, 13 August 2015
  • RAREFY
    ...casis''']] (supervisor). Please contact ''sfengsph at umich dot edu'' or ''goncalo at umich dot edu'' for questions.
    882 bytes (125 words) - 19:17, 16 February 2015
  • Introduction to new students
    Lecture Notes for Goncalo's Introductory Genetics Course [[Biostatistics 666]]
    2 KB (304 words) - 20:39, 17 June 2014
  • Goncalo Abecasis
    ...http://storify.com/gabecasis/overton-prize-lecture Storify], and related [[Goncalo Abecasis: Interview with Christiana Fogg|Interview with Christiana Fogg]]
    1 KB (163 words) - 00:51, 3 August 2013
  • MaCH
    ...otyping, genotype imputation and disease association analysis developed by Goncalo Abecasis and Yun Li. MaCH was first used to imputed missing genotypes in ou
    1 KB (171 words) - 07:34, 26 November 2010
  • METAL
    ....vol.26-pp.2190.pdf manuscript available here]). It was first developed by Goncalo Abecasis, Yun Li and Cristen Willer. Early versions were used for the analy
    1 KB (205 words) - 09:33, 25 March 2011
  • Biostatistics 666: Main Page
    Goncalo Abecasis taught it in the following academic years: .... For previous course notes, see [[http://csg.sph.umich.edu/abecasis/class Goncalo's older class notes]].
    7 KB (901 words) - 09:16, 10 December 2017
  • Class Notes
    ...ing, please e-mail the course instructor (either [mailto:goncalo@umich.edu Goncalo Abecasis] or [mailto:hmkang@umich.edu Hyun Min Kang]).
    2 KB (247 words) - 15:44, 4 February 2015
  • SEQMIX
    * libsrc: a folder contains source code from code written by Goncalo Abecasis
    2 KB (373 words) - 02:07, 4 November 2013
  • Shuang Feng
    ...is a PhD student in Department of Biostatistics, working with professor [[Goncalo Abecasis|'''Gonçalo Abecasis''']]. She joined the program in 2010. Before
    2 KB (306 words) - 19:29, 16 February 2015
  • EMADS
    ...email [mailto:svrieze@umich.edu Scott Vrieze] or [mailto:goncalo@umich.edu Goncalo Abecasis]. In consultation with Goncalo, Scott will receive and coordinate proposals for discussion during regular
    8 KB (1,152 words) - 22:03, 14 November 2013
  • NHLBI Informatics Resource
    * [[Goncalo Abecasis]] is Informatics Resource Lead
    2 KB (332 words) - 00:04, 31 January 2015
  • Biostatistics 501: Main Page
    This course is offered every year. [[Goncalo Abecasis]] is teaching it for the first time in the Fall of 2015.
    3 KB (506 words) - 15:10, 10 July 2015
  • PedScript
    ...If you find a bug, we'll try to fix it - e-mail [mailto:goncalo@umich.edu Goncalo Abecasis].
    2 KB (351 words) - 04:23, 4 June 2010
  • 1000 Genomes Project Pilot 1 SNP Calling
    key command: glfSplit<br>Source codes: ~goncalo/code/glfSplit/ ...BGZF<br>Source codes&nbsp;: /home/ylwtx/codes/cpp/glfMerge<br> Originally ~goncalo/code/glfMerge<br>Input&nbsp;: GLF files for one individual<br>Output&nbsp;:
    7 KB (1,088 words) - 12:35, 10 March 2010
  • Biostatistics 615/815: Main Page
    ...r previous course notes, see [[http://www.sph.umich.edu/csg/abecasis/class Goncalo's older class notes]].
    8 KB (1,077 words) - 20:53, 18 December 2012
  • 830 - MINIMAC::main()
    "(c) 2010-2011 Goncalo Abecasis, Christian Fuchsberger\n");
    12 KB (1,088 words) - 14:06, 2 October 2013
  • TabAnno
    ... Xiaowei Zhan, Goncalo Abecasis ... ...mich.edu zhanxw@umich.edu]) or Goncalo Abecasis ([mailto:goncalo@umich.edu goncalo@umich.edu])
    14 KB (1,969 words) - 10:57, 2 February 2017
  • Thunder
    ...ped by [mailto:yunli@med.unc.edu Yun Li] and for [mailto:goncalo@umich.edu Goncalo Abecasis] the 1000 Genomes Low Coverage Pilot Project.
    4 KB (605 words) - 11:08, 21 February 2017
  • Haploxt
    ...ph.umich.edu/csg/yli/ Yun Li] and [https://www.sph.umich.edu/csg/abecasis/ Goncalo Abecasis]. It calculates LD (D' and r<sup>2</sup>) from phased haplotypes.
    4 KB (510 words) - 17:22, 21 October 2010
  • Minimac3 ChangeLog
    The Unique.cpp file was updated according to Goncalo's packVcf so-
    10 KB (1,262 words) - 21:24, 6 June 2016
  • QPLOT
    ...ngshan Li, Xiaowei Zhan, Mary-Kate Wing, Paul Anderson, Hyun Min Kang, and Goncalo R. Abecasis, “QPLOT: A Quality Assessment Tool for Next Generation Sequen ...mich.edu zhanxw@umich.edu]) or Goncalo Abecasis ([mailto:goncalo@umich.edu goncalo@umich.edu])
    16 KB (2,386 words) - 10:42, 2 February 2017
  • TrioCaller
    ...ating GLF requires an old version of samtools that most people don't have. Goncalo ...m weichen.mich@gmail.com] or Goncalo Abecasis at [mailto:goncalo@umich.edu goncalo@umich.edu]
    15 KB (2,470 words) - 17:01, 19 May 2015
  • An example of using libcsg
    Here I showed an example using Goncalo's library (I assume he agreed me to do so).<br>
    5 KB (693 words) - 23:39, 14 January 2010
  • SAM/BAM Convert Sequence
    '''Requester:''' Goncalo Abecasis & Hyun Min Kang
    12 KB (1,651 words) - 09:37, 2 February 2017
  • Minimac2
    Please contact [mailto:goncalo@umich.edu Goncalo Abecasis] or [mailto:cfuchsb@umich.edu Christian Fuchsberger]. Please contact [mailto:goncalo@umich.edu Goncalo Abecasis] or [mailto:cfuchsb@umich.edu Christian Fuchsberger].
    13 KB (2,050 words) - 11:53, 9 March 2018
  • Biostatistics 615/815 Fall 2011
    ...r previous course notes, see [[http://www.sph.umich.edu/csg/abecasis/class Goncalo's older class notes]].
    11 KB (1,312 words) - 16:35, 31 August 2012
  • Genezoom
    ...fforts by Cristen Willer, Jin Chen, He zhang, Ellen Schmidt, Wei Zhou, and Goncalo Abecasis. Please email Cristen Willer [cristen@umich.edu] with any question
    7 KB (1,057 words) - 10:40, 16 March 2016
  • Minimac: Tutorial
    Please contact [mailto:goncalo@umich.edu Goncalo Abecasis], [mailto:cfuchsb@umich.edu Christian Fuchsberger (minimac)] or [m
    7 KB (1,087 words) - 11:34, 25 January 2017
  • Biostatistics 866: Main Page
    April 9 - [[Media:2017.04_-_Adventures_in_Human_Genetics.pdf|Goncalo's Adventure in Human Genetics]]
    9 KB (1,319 words) - 06:21, 18 April 2017
  • Minimac
    Please contact [mailto:goncalo@umich.edu Goncalo Abecasis] or [mailto:cfuchsb@umich.edu Christian Fuchsberger]. Please contact [mailto:goncalo@umich.edu Goncalo Abecasis] or [mailto:cfuchsb@umich.edu Christian Fuchsberger].
    16 KB (2,442 words) - 11:53, 9 March 2018
  • Famrvtest
    ...g Feng]] (sfengsph at umich.edu) or [[Goncalo_Abecasis|Gonçalo Abecasis]] (goncalo at umich.edu).
    7 KB (1,065 words) - 09:34, 21 February 2017
  • Summary Statistics Files Specification for RAREMETAL and rvtests
    ...u]), Shuang Feng([mailto:sfengsph@umich.edu]) or Goncalo Abecasis ([mailto:goncalo@umich.edu]).
    8 KB (658 words) - 10:39, 29 August 2019
  • RAREMETALWORKER
    ...aichen at umich dot edu) or [[Goncalo_Abecasis | '''Goncalo Abecasis''']] (goncalo at umich dot edu).
    18 KB (2,478 words) - 12:34, 20 November 2019
  • GREGOR
    ...fforts by Cristen Willer, Jin Chen, Wei Zhou, Ellen Schmidt, He Zhang, and Goncalo Abecasis. Please email Cristen Willer [cristen@umich.edu] with any question
    9 KB (1,222 words) - 16:39, 15 November 2016
  • VcfCooker
    ...ckinger, Matthew Snyder, Paul Anderson, Tom Blackwell, Mary Kate Wing, and Goncalo Abecasis. Please email to Hyun Min Kang [[mailto:hmkang@umich.edu| hmkang@u
    9 KB (1,110 words) - 00:51, 31 October 2015
  • Rvtests
    ...Goncalo Abecasis<br />([mailto:goncalo@umich.edu [mailto:goncalo@umich.edu goncalo@umich.edu]])
    29 KB (4,420 words) - 23:31, 11 May 2016
  • RareMETALS
    ...contact Dajiang Liu (dajiang.liu at outlook dot com) or Gonçalo Abecasis (goncalo at umich dot edu). The same methodology is also implemented in command line
    18 KB (2,053 words) - 09:18, 18 May 2017
  • Exome Chip Design
    * Goncalo Abecasis (University of Michigan) A small group of individuals, led by Mark Daly and Goncalo Abecasis, was responsible for content selection.
    21 KB (2,877 words) - 06:42, 6 August 2013
  • LiftOver
    * Goncalo: all other supports
    14 KB (2,263 words) - 17:33, 15 July 2015
  • Biostatistics 830: Main Page
    This course is an ad-hoc course, first taught by Goncalo Abecasis in the Fall of 2013.
    7 KB (1,068 words) - 02:43, 5 January 2017
  • Biostatistics 830: Fall 2013 Edition
    This course is an ad-hoc course, first taught by Goncalo Abecasis in the Fall of 2013.
    8 KB (1,143 words) - 12:59, 2 September 2014
  • SardiNIA
    * Goncalo Abecasis (University of Michigan, Ann Arbor)
    12 KB (1,693 words) - 09:24, 8 September 2018
  • Biostatistics 615/815 Winter 2011
    ...r previous course notes, see [[http://www.sph.umich.edu/csg/abecasis/class Goncalo's older class notes]].
    36 KB (4,875 words) - 23:10, 5 September 2011
  • Tutorial: GotCloud UW CMG
    ... Xiaowei Zhan, Goncalo Abecasis ... ... Xiaowei Zhan, Goncalo Abecasis ...
    46 KB (5,757 words) - 15:15, 6 August 2013
  • Generic Exome Analysis Plan
    ...n of this document was prepared with input from Shamil Sunayev, Ron Do and Goncalo Abecasis.
    11 KB (1,630 words) - 12:07, 21 May 2010
  • MaCH FAQ
    Email [mailto:yunli@med.unc.edu Yun Li] or [mailto:goncalo@umich.edu Goncalo Abecasis].
    13 KB (2,030 words) - 10:22, 2 February 2017
  • UMAKE
    ...idore, Yun Li, Paul Anderson, Mary Kate Wing, Wei Chen, Tom Blackwell, and Goncalo Abecasis. Please email to Hyun Min Kang [[mailto:hmkang@umich.edu| hmkang@u
    16 KB (2,060 words) - 10:53, 2 February 2017
  • EMADS Primary Analysis Plan
    ...trix within a sliding window (default: 1Mb). Shuang Feng, Dajiang Liu, and Goncalo Abecasis at the University of Michigan have developed software specifically
    14 KB (2,173 words) - 22:03, 14 November 2013
  • METAL Documentation
    METAL was developed by Goncalo Abecasis, Yun Li and Cristen Willer ([http://www.sph.umich.edu/csg/abecasis
    19 KB (2,912 words) - 14:52, 22 December 2017
  • Minimac: 1000 Genomes Imputation Cookbook
    Please contact [mailto:goncalo@umich.edu Goncalo Abecasis], [mailto:cfuchsb@umich.edu Christian Fuchsberger (minimac)] or [m
    19 KB (2,860 words) - 02:40, 28 January 2015
  • VerifyBamID
    ...tive effort by Hyun Min Kang, Goo Jun, Matthew Flickinger, Mary Kate Wing, Goncalo Abecasis, and Michael Boehnke. Please email to Hyun Min Kang [hmkang@umich.
    20 KB (2,795 words) - 14:29, 9 September 2017
  • SeqShop: Genetic Association Analysis Practical, June 2014
    ... Xiaowei Zhan, Goncalo Abecasis ...
    19 KB (2,551 words) - 09:27, 2 February 2017
  • SeqShop: Association Analysis, May 2015
    ... Xiaowei Zhan, Goncalo Abecasis ...
    20 KB (2,538 words) - 13:15, 21 May 2015
  • SeqShop: Genetic Association Analysis Practical, December 2014
    ... Xiaowei Zhan, Goncalo Abecasis ...
    21 KB (2,694 words) - 09:27, 2 February 2017
  • LocusZoom Standalone
    *[[New Fugue|new_fugue]], a program for computing LD, written by Goncalo Abecasis.
    45 KB (6,829 words) - 17:03, 18 November 2021
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