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for ln in myopen('/net/wonderland/home/zhanxw/mydata/dbSNP/SNPHistory.bcp.gz'): for ln in myopen('/net/wonderland/home/zhanxw/mydata/dbSNP/RsMergeArch.bcp.gz'):

To get a copy of the software, please contact: zhanxw@umich.edu . For CSG users, the binary executable is located at: /net/fantasia/home/zhanxw/spa/cpp/executable/ancestrySeq

params['LIFTOVER_BIN'] = '/net/wonderland/home/zhanxw/mycode/liftOver/liftOver' params['CHAIN'] = '/home/zhanxw/mycode/liftOver/hg18ToHg19.over.chain.gz'

...ome in NCBI build 37 (you also need to download [http://csg.sph.umich.edu//zhanxw/software/anno/resources/hs37d5.fa.fai hs37d5.fai] ) ...ces/refFlat.gencode.v7.gz Gencode version 7] or [http://csg.sph.umich.edu//zhanxw/software/anno/resources/refFlat.gencode.v11.gz Gencode version 11].

...'. After you passed the checking, you can go on to run [https://github.com/zhanxw/rvtests rvtests] - rare-variant test software. ....gz this] and unzip the downloaded file. This includes [https://github.com/zhanxw/checkVCF/blob/master/checkVCF.py checkVCF.py] script, reference genome in F

...ng with source code . You can download it from: [http://csg.sph.umich.edu//zhanxw/software/qplot/qplot.20130627.tar.gz qplot.20130627.tar.gz (File Size: 1.7G We provide a source code only download in [http://csg.sph.umich.edu//zhanxw/software/qplot/qplot-source.20130627.tar.gz qplot-source.20130627.tar.gz].

...Number.py [[liftRsNumber.py]] and its interal location: /net/fantasia/home/zhanxw/amd/analyze/verifyBamID/liftRsNumber.py * NCBI SNPChrPosOnRef build 132 [http://qbrc.swmed.edu/zhanxw/software/liftOver/b132_SNPChrPosOnRef_37_1.bcp.gz file] and [http://www.ncb

...mentation can always be found at: [http://zhanxw.github.io/rvtests/ http://zhanxw.github.io/rvtests/])'''</span> ...mentation can always be found at: [http://zhanxw.github.io/rvtests/ http://zhanxw.github.io/rvtests/])'''</span>

... zhanxw@umich.edu ... ... zhanxw@umich.edu ...

... zhanxw@umich.edu ...

... zhanxw@umich.edu ...

... zhanxw@umich.edu ...