Uncategorized pages

From Genome Analysis Wiki
Jump to navigationJump to search

Showing below up to 386 results in range #1 to #386.

View (previous 500 | next 500) (20 | 50 | 100 | 250 | 500)

  1. 1000 Genomes Project Pilot 1 SNP Calling
  2. 830 - BasicMapper::main()
  3. 830 - BestAlignment::ClearPositions()
  4. 830 - BestAlignment::EvaluateAlignment() (detailed comparison)
  5. 830 - BestAlignment::EvaluateAlignment() (main loop)
  6. 830 - BestAlignment::IterateCache()
  7. 830 - BestAlignment::MaqAlignment()
  8. 830 - BestAlignment::isNewPosition()
  9. 830 - Haplotyper::ConditionOnData()
  10. 830 - Haplotyper::ImputeGenotypes()
  11. 830 - Haplotyper::ImputeGenotypes() (edge)
  12. 830 - Haplotyper::ImputeGenotypes() (internal)
  13. 830 - Haplotyper::RandomSetup()
  14. 830 - Haplotyper::SampleChromosomes()
  15. 830 - Haplotyper::SampleHaplotypes()
  16. 830 - Haplotyper::SampleOneHaplotype()
  17. 830 - Haplotyper::ScoreLeftConditional()
  18. 830 - Haplotyper::ScoreLeftConditional() (smart, complicated)
  19. 830 - Haplotyper::SetupPrior()
  20. 830 - Haplotyper::SummarizeOptions()
  21. 830 - Haplotyper::Transpose()
  22. 830 - MINIMAC::main()
  23. 830 - MaqIndex::BuildIndex()
  24. 830 - MaqIndex::CompareToIndex()
  25. 830 - MaqIndex::GetWord()
  26. 830 - MaqIndex::LookupWord()
  27. 830 - MarkovModel::Condition()
  28. 830 - MarkovModel::CountErrors()
  29. 830 - MarkovModel::CountErrorsAndRecombinants()
  30. 830 - MarkovModel::CountRecombinants()
  31. 830 - MarkovModel::Impute()
  32. 830 - MarkovModel::Transpose()
  33. 830 - MarkovModel::WalkLeft()
  34. 830 - MarkovModel::WalkRight()
  35. AWS Credentials
  36. AWS Resources
  37. Abecasis Group Awards
  38. Abecasis Lab
  39. Alan Kwong
  40. Amazon Single Node
  41. Amazon Snapshot
  42. Amazon Storage
  43. An example of using libcsg
  44. Analyses of Indels
  45. Ancestry
  46. Ann Arbor Travel Basics
  47. BAM
  48. BAM to FASTQ
  49. BamGenotypeCheck
  50. BamPileup
  51. BamUtil: FAQ
  52. BamUtil: bam2FastQ
  53. Bar Harbor Statistical Genetics Workshop
  54. BaseQualityCheck
  55. Base Caller Summaries
  56. Basic Linux Intro
  57. Bayesdenovo
  58. Ben Lerch
  59. Better X Sessions from Home (NX)
  60. Biostatistics 501: Main Page
  61. Biostatistics 602: Main Page
  62. Biostatistics 615/815: Main Page
  63. Biostatistics 615/815 Fall 2011
  64. Biostatistics 615/815 Winter 2011
  65. Biostatistics 666: Advanced Coalescent, Changing Population Size
  66. Biostatistics 666: Advanced Coalescent, Computation with the Coalescent
  67. Biostatistics 666: Advanced Haplotype Estimation
  68. Biostatistics 666: Analysis of Copy Number Using Sequence Data
  69. Biostatistics 666: Analysis of Low Pass Sequence Data
  70. Biostatistics 666: Applications of the Lander-Green Algorithm
  71. Biostatistics 666: Association Tests in Structured Populations
  72. Biostatistics 666: Contemporary Human Genetics
  73. Biostatistics 666: Copy Number Variation
  74. Biostatistics 666: Core Competencies
  75. Biostatistics 666: Course Introduction and Hardy Weinberg Equilibrium
  76. Biostatistics 666: Genotype Imputation
  77. Biostatistics 666: Haplotype Association Tests
  78. Biostatistics 666: Haplotype Estimation
  79. Biostatistics 666: Hardy-Weinberg Equilibrium
  80. Biostatistics 666: Introduction to De Novo Assembly
  81. Biostatistics 666: Introduction to the Coalescent
  82. Biostatistics 666: Introduction to the E-M Algorithm
  83. Biostatistics 666: Introductory Lecture
  84. Biostatistics 666: Likelihood Calculations for Large Pedigrees
  85. Biostatistics 666: Linkage Analysis in Sibling Pairs
  86. Biostatistics 666: Linkage Disequilibrium
  87. Biostatistics 666: Linkage Tests for Pairs of Individuals
  88. Biostatistics 666: Main Page
  89. Biostatistics 666: Maximum Likelihood Allele Frequency Estimation
  90. Biostatistics 666: Modeling Recombination and Migration in the Coalescent
  91. Biostatistics 666: Modeling Variation in the Coalescent
  92. Biostatistics 666: Multipoint Analysis in Sibling Pairs
  93. Biostatistics 666: Power of Genomewide Association Studies
  94. Biostatistics 666: Rare Variant Burden Tests
  95. Biostatistics 666: Relationship Checking
  96. Biostatistics 666: The Lander-Green Algorithm
  97. Biostatistics 666: The Possible Triangle Constraint
  98. Biostatistics 666: Variance Component Analyses
  99. Biostatistics 666: Whole Genome Sequencing
  100. Biostatistics 815 Term Project
  101. Biostatistics 830: Core Competencies
  102. Biostatistics 830: Fall 2013 Edition
  103. Biostatistics 830: Main Page
  104. Biostatistics 830 - Code Snippets
  105. Biostatistics 866: Core Competencies
  106. Biostatistics 866: Main Page
  107. C++ Class: Pedigree Example
  108. C++ Class Averages
  109. C++ Library: FASTQ Change Log
  110. C++ Library: general Change Log
  111. CHARGE
  112. CSG Tech Talks
  113. CalcMatch
  114. CheckVCF.py
  115. ChunkChromosome
  116. CigarRoller Proposed Update
  117. Class Notes
  118. Computer How-Tos
  119. Configure GotCloud
  120. ContaminationDetection
  121. Creating a Snapshot on EC2
  122. Creating an AMI on EC2
  123. Dajiang Liu
  124. Debuggers
  125. DosageConvertor
  126. Dosage convertor
  127. EMADS
  128. EMADS Primary Analysis Plan
  129. EMMAX
  130. EPACTS
  131. EPACTS for DIAGRAM
  132. Editing Sequence Analysis Practice 2011/03/10
  133. Evaluating a Read Mapper on Simulated Data
  134. Example
  135. Examples of Read Mapping with Karma and BWA
  136. Exome Chip Design
  137. FASTA
  138. FTEC
  139. FamLDCaller
  140. FamRvTest command
  141. FamRvTest tutorial
  142. Famrvtest
  143. FastQ Validation Criteria
  144. Fst
  145. GBR60vc.conf
  146. GLF
  147. GREGOR
  148. GTDT
  149. GWAS
  150. Garlic
  151. Gene Ontology
  152. Generic Exome Analysis Plan
  153. Genezoom
  154. Genotype Likelihood Based Allele Balance
  155. Genotype Likelihood based Allele Frequency
  156. Genotype Likelihood based Hardy-Weinberg Test
  157. Genotype Likelihood based Inbreeding Coefficient
  158. Git Cheat Sheet
  159. Git FAQs
  160. GlfMerge
  161. Goncalo Abecasis
  162. Goncalo Abecasis: Interview with Christiana Fogg
  163. GotCloud
  164. GotCloud: AMIs
  165. GotCloud: Alignment Pipeline
  166. GotCloud: Alignment Sub-Pipelines
  167. GotCloud: Amazon
  168. GotCloud: Amazon Demo
  169. GotCloud: Binary Releases
  170. GotCloud: Configuration
  171. GotCloud: Creating a New Pipeline
  172. GotCloud: FAQs
  173. GotCloud: Filters
  174. GotCloud: Genetic Reference and Resource Files
  175. GotCloud: GenomeSTRiP Pipeline
  176. GotCloud: RedHat Package
  177. GotCloud: Reference Files
  178. GotCloud: Source Releases
  179. GotCloud: Variant Calling Options
  180. GotCloud: Variant Calling Pipeline
  181. GotCloud: Versions
  182. Gzip
  183. Gzip File
  184. HAPMIX
  185. Haploxt
  186. Hardy Weinberg equilibrium
  187. How To Use Git
  188. How to use aspera
  189. IGFPipe
  190. IMPUTE2
  191. IMPUTE2: 1000 Genomes Imputation Cookbook
  192. Idriver
  193. Imputation Server: Example
  194. Indel
  195. Installing MinGW & MSYS on Windows
  196. Introduction to new students
  197. Jennifer Bragg-Gresham
  198. Karma-colorspace
  199. Kyoto Encyclopedia of Genes and Genomes
  200. LASER
  201. Lars Fritsche
  202. LibStatGen Download
  203. LibStatGen Repository
  204. LibStatGen Troubleshooting
  205. LiftMap.py
  206. LiftOver
  207. LiftRsNumber.py
  208. Ligate Minimac
  209. Links to Sequence Analysis Tools
  210. M3VCF Files
  211. M3vcftools
  212. M3vcftools Usage
  213. MEAGA
  214. MERLIN format
  215. METAL ADDFILTER
  216. METAL COLUMNCOUNTING
  217. METAL CUSTOMVARIABLE
  218. METAL Command Reference
  219. METAL Documentation
  220. METAL EFFECTLABEL
  221. METAL FAQ
  222. METAL GENOMICCONTROL
  223. METAL Glucose Example Script
  224. METAL LOGPVALUE
  225. METAL Quick Start
  226. METAL SOURCE
  227. METAL VERBOSE
  228. MaCH: 1000 Genomes Imputation Cookbook
  229. MaCH: Input Files
  230. MaCH: Pedigree with Integer Allele Codes
  231. MaCH: machX
  232. MaCH FAQ
  233. MaCH Options
  234. Mach2dat: Association with MACH output
  235. Mach DAC
  236. Main Page
  237. Make file tutorial
  238. Makefile.tool
  239. Mantra.cpp
  240. MappabilityScores
  241. Mapping Quality Scores
  242. Mary Kate Wing
  243. MetaMinimac
  244. Meta Analysis of SNPxEnvironment Interaction
  245. Minimac3 - Full List of Options
  246. Minimac3 ChangeLog
  247. Minimac3 Cookbook : Chromosome X Imputation
  248. Minimac3 Cookbook : Converting Files to VCF
  249. Minimac3 Cookbook : Pre-Phasing
  250. Minimac3 Examples
  251. Minimac3 Imputation Cookbook
  252. Minimac3 Info (Older Version)
  253. Minimac3 Info File
  254. Minimac3 Usage
  255. Minimac4 - Full List of Options
  256. Minimac4 Documentation
  257. Minimac: 1000 Genomes Imputation Cookbook
  258. Minimac: Tutorial
  259. Minimac Command Reference
  260. Minimac Diagnostics
  261. Mount S3 Volume
  262. MutationFilter
  263. NHLBI Exome Sequencing Project
  264. NHLBI Informatics Resource
  265. Outcomes For Mapping A Paired End
  266. Parameters.h
  267. PhoneHome
  268. Phred scale
  269. PileupBasedVariantCalling
  270. Polymutt2
  271. Polymutt beta
  272. Power Calculations: Quantitative Traits
  273. QPLOT
  274. RAREFY
  275. RAREFY COMMAND
  276. RAREFY DOCUMENTATION
  277. RAREFY DOWNLOAD
  278. RAREFY FAQ
  279. RAREFY TUTORIAL
  280. RAREMETALWORKER X
  281. Rare-metal-worker
  282. RareMETALS
  283. RareMETALS2
  284. RareMetals
  285. RareSimu
  286. Rare Variant Analysis and Meta-Analysis
  287. Rare variant tests
  288. Read Mapping
  289. Regions of high linkage disequilibrium (LD)
  290. Releasing GotCloud
  291. Rvtests
  292. SAM
  293. SAM/BAM Convert Sequence
  294. SAM: Filtering Reads
  295. SAM Validation Criteria
  296. SAV Command Line Interface
  297. SAV File Format
  298. SEQMIX
  299. SNP Call Set Properties
  300. Samtools-hybrid
  301. Sara Rashkin
  302. SardiNIA
  303. SardiNIA project meeting July 15-16, 2013
  304. SavR
  305. Savvy C++ Library
  306. Sayantan Das
  307. Scott Vrieze
  308. Screen Commands
  309. Sean Caron
  310. SeqShop: Aligning Your Own Genome, December 2014
  311. SeqShop: Aligning Your Own Genome, June 2014
  312. SeqShop: Aligning Your Own Genome, May 2015
  313. SeqShop: Analysis of Structural Variation Practical, December 2014
  314. SeqShop: Analysis of Structural Variation Practical, June 2014
  315. SeqShop: Analysis of Structural Variation Practical, May 2015
  316. SeqShop: Ancestry On Your Own Genome, December 2014
  317. SeqShop: Ancestry On Your Own Genome, June 2014
  318. SeqShop: Ancestry On Your Own Genome, May 2015
  319. SeqShop: Association Analysis, May 2015
  320. SeqShop: Calling Your Own Genome, December 2014
  321. SeqShop: Calling Your Own Genome, June 2014
  322. SeqShop: Calling Your Own Genome, May 2015
  323. SeqShop: December 2014
  324. SeqShop: Estimates of Genetic Ancestry Practical, December 2014
  325. SeqShop: Estimates of Genetic Ancestry Practical, June 2014
  326. SeqShop: Estimates of Genetic Ancestry Practical, May 2015
  327. SeqShop: Friday - Practicing what we learned, June 2014
  328. SeqShop: Genetic Association Analysis Practical, December 2014
  329. SeqShop: Genetic Association Analysis Practical, June 2014
  330. SeqShop: June 2014
  331. SeqShop: May 2015
  332. SeqShop: Sequence Mapping and Assembly Practical, December 2014
  333. SeqShop: Sequence Mapping and Assembly Practical, June 2014
  334. SeqShop: Sequence Mapping and Assembly Practical, May 2015
  335. SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014
  336. SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014
  337. SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015
  338. SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014
  339. SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
  340. SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015
  341. Sequence Analysis Practice 2011/03/09
  342. Sequencing Workshop Analysis of Indels
  343. Short Workshops
  344. Shuang Feng
  345. SplitPed
  346. SplitRef
  347. StarCluster
  348. Stouffer Method for Meta-Analysis
  349. StringMap.h
  350. TOPMed Site Visit 2018
  351. TabAnno
  352. Tandem Repeat Concepts
  353. Test EPACTS for DIAGRAM
  354. Thunder
  355. ThunderVCF
  356. Tom Blackwell
  357. Tramp
  358. Trial Enrichment
  359. TrioCaller
  360. TrioCaller:Archive
  361. Triodenovo
  362. Tutorial: EMMAX GotCloud STOM
  363. Tutorial: EMMAX GotCloud STOM: Lecture 2
  364. Tutorial: EMMAX GotCloud STOM: Lecture 5
  365. Tutorial: EMMAX GotCloud STOM: Lecture 6
  366. Tutorial: EMMAX GotCloud STOM: Lecture 8
  367. Tutorial: GotCloud
  368. Tutorial: GotCloud UW CMG
  369. Tutorial: Low Pass Sequence Analysis
  370. Tutorial: Low Pass Sequence Analysis Answers
  371. UMAKE-glfSingle
  372. Understanding QPLOT output
  373. Understanding VerifyBamID output
  374. Understanding vcf-summary output
  375. Using Git Example
  376. Using Gotcloud on Flux
  377. Utility Library
  378. VCF
  379. Variant Normalization
  380. Variant classification
  381. Vcf2geno
  382. VcfCodingSnps
  383. Verifying Sample Identities - Implementation
  384. Vt
  385. Xiaowei Zhan
  386. Zlib

View (previous 500 | next 500) (20 | 50 | 100 | 250 | 500)

Retrieved from "http://genome.sph.umich.edu/wiki/Special:UncategorizedPages"