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29 bytes added
, 01:25, 24 November 2013
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| # PVALUE P-value | | # PVALUE P-value |
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− | === RAREMETALWORKER === | + | === RAREMETALWORKER Example === |
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| RAREMETALWORKER generates prefix.traitName.singlevar.score.txt, e.g. prefix.HDL.singlevar.score.txt | | RAREMETALWORKER generates prefix.traitName.singlevar.score.txt, e.g. prefix.HDL.singlevar.score.txt |
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| 1 565111 T C 2778 0.0170986 0.0170986 95 1 4.19613e-102 2730 1 47 24.0897 13.6258 0.129688 0.0770708 | | 1 565111 T C 2778 0.0170986 0.0170986 95 1 4.19613e-102 2730 1 47 24.0897 13.6258 0.129688 0.0770708 |
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− | === Rvtests === | + | === Rvtests Example === |
| Rvtests generates prefix.MetaScore.assoc, e.g. prefix.MetaScore.assoc | | Rvtests generates prefix.MetaScore.assoc, e.g. prefix.MetaScore.assoc |
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| # COV (rvtests only) Covariance matrix between test statistics | | # COV (rvtests only) Covariance matrix between test statistics |
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− | === RAREMETALWORKER === | + | === RAREMETALWORKER Example === |
| RAREMETALWORKER generates prefix.traitName.singlevar.cov.txt, e.g. prefix.HDL.singlevar.cov.txt | | RAREMETALWORKER generates prefix.traitName.singlevar.cov.txt, e.g. prefix.HDL.singlevar.cov.txt |
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| 1 878744 878744,879381,1560000,1864659,1877659 0.000404537,-0.000235215,-1.4455e-05,-8.69137e-06,-3.1027e-05, | | 1 878744 878744,879381,1560000,1864659,1877659 0.000404537,-0.000235215,-1.4455e-05,-8.69137e-06,-3.1027e-05, |
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− | === Rvtests === | + | === Rvtests Example === |
| Rvtests generates prefix.MetaCov.assoc.gz, e.g. prefix.HDL.MetaCov.assoc.gz | | Rvtests generates prefix.MetaCov.assoc.gz, e.g. prefix.HDL.MetaCov.assoc.gz |
| Later version of rvtests will also generate tabix index file, prefix.MetaCov.assoc.gz | | Later version of rvtests will also generate tabix index file, prefix.MetaCov.assoc.gz |