Difference between revisions of "Talk:GotCloud"

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(Created page with "==Organization of the GotCloud pages on this wiki== The main page is http://genome.sph.umich.edu/wiki/GotCloud . Setup pages: * http://genome.sph.umich.edu/wiki/GotCloud:_Bi...")
 
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The main page is http://genome.sph.umich.edu/wiki/GotCloud .
 
The main page is http://genome.sph.umich.edu/wiki/GotCloud .
  
Setup pages:
+
Setup instructions:
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Binary_Releases
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Binary_Releases
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Source_Releases
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Source_Releases
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Documentation of steps in the GotCloud pipeline:
 
Documentation of steps in the GotCloud pipeline:
 +
* http://genome.sph.umich.edu/wiki/GotCloud:_Genetic_Reference_and_Resource_Files (documentation and instructions)
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Pipeline
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Pipeline
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Options
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Options
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Filters
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Filters
 +
 +
Configuration:
 +
* http://genome.sph.umich.edu/wiki/Configure_GotCloud (mainly covers <code>BATCH_OPTS</code>)
  
 
Tutorials:
 
Tutorials:
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* http://genome.sph.umich.edu/wiki/Amazon_Snapshot
 
* http://genome.sph.umich.edu/wiki/Amazon_Snapshot
 
* http://genome.sph.umich.edu/wiki/Creating_a_Snapshot_on_EC2
 
* http://genome.sph.umich.edu/wiki/Creating_a_Snapshot_on_EC2
 +
* http://genome.sph.umich.edu/wiki/GotCloud:_Reference_Files (<code>FA_REF</code> has since been renamed.)

Revision as of 23:49, 7 January 2016

Organization of the GotCloud pages on this wiki

The main page is http://genome.sph.umich.edu/wiki/GotCloud .

Setup instructions:

Documentation of steps in the GotCloud pipeline:

Configuration:

Tutorials:

Pages for developers:

Event-specific pages:

Pages that ought to be hidden or deleted: