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, 23:49, 7 January 2016
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| The main page is http://genome.sph.umich.edu/wiki/GotCloud . | | The main page is http://genome.sph.umich.edu/wiki/GotCloud . |
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− | Setup pages: | + | Setup instructions: |
| * http://genome.sph.umich.edu/wiki/GotCloud:_Binary_Releases | | * http://genome.sph.umich.edu/wiki/GotCloud:_Binary_Releases |
| * http://genome.sph.umich.edu/wiki/GotCloud:_Source_Releases | | * http://genome.sph.umich.edu/wiki/GotCloud:_Source_Releases |
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| Documentation of steps in the GotCloud pipeline: | | Documentation of steps in the GotCloud pipeline: |
| + | * http://genome.sph.umich.edu/wiki/GotCloud:_Genetic_Reference_and_Resource_Files (documentation and instructions) |
| * http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline | | * http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline |
| * http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Pipeline | | * http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Pipeline |
| * http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Options | | * http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Options |
| * http://genome.sph.umich.edu/wiki/GotCloud:_Filters | | * http://genome.sph.umich.edu/wiki/GotCloud:_Filters |
| + | |
| + | Configuration: |
| + | * http://genome.sph.umich.edu/wiki/Configure_GotCloud (mainly covers <code>BATCH_OPTS</code>) |
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| Tutorials: | | Tutorials: |
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| * http://genome.sph.umich.edu/wiki/Amazon_Snapshot | | * http://genome.sph.umich.edu/wiki/Amazon_Snapshot |
| * http://genome.sph.umich.edu/wiki/Creating_a_Snapshot_on_EC2 | | * http://genome.sph.umich.edu/wiki/Creating_a_Snapshot_on_EC2 |
| + | * http://genome.sph.umich.edu/wiki/GotCloud:_Reference_Files (<code>FA_REF</code> has since been renamed.) |