Difference between revisions of "Talk:GotCloud"
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Jump to navigationJump to search (Created page with "==Organization of the GotCloud pages on this wiki== The main page is http://genome.sph.umich.edu/wiki/GotCloud . Setup pages: * http://genome.sph.umich.edu/wiki/GotCloud:_Bi...") |
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The main page is http://genome.sph.umich.edu/wiki/GotCloud . | The main page is http://genome.sph.umich.edu/wiki/GotCloud . | ||
| − | Setup | + | Setup instructions: |
* http://genome.sph.umich.edu/wiki/GotCloud:_Binary_Releases | * http://genome.sph.umich.edu/wiki/GotCloud:_Binary_Releases | ||
* http://genome.sph.umich.edu/wiki/GotCloud:_Source_Releases | * http://genome.sph.umich.edu/wiki/GotCloud:_Source_Releases | ||
| Line 13: | Line 13: | ||
Documentation of steps in the GotCloud pipeline: | Documentation of steps in the GotCloud pipeline: | ||
| + | * http://genome.sph.umich.edu/wiki/GotCloud:_Genetic_Reference_and_Resource_Files (documentation and instructions) | ||
* http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline | * http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline | ||
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Pipeline | * http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Pipeline | ||
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Options | * http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Options | ||
* http://genome.sph.umich.edu/wiki/GotCloud:_Filters | * http://genome.sph.umich.edu/wiki/GotCloud:_Filters | ||
| + | |||
| + | Configuration: | ||
| + | * http://genome.sph.umich.edu/wiki/Configure_GotCloud (mainly covers <code>BATCH_OPTS</code>) | ||
Tutorials: | Tutorials: | ||
| Line 39: | Line 43: | ||
* http://genome.sph.umich.edu/wiki/Amazon_Snapshot | * http://genome.sph.umich.edu/wiki/Amazon_Snapshot | ||
* http://genome.sph.umich.edu/wiki/Creating_a_Snapshot_on_EC2 | * http://genome.sph.umich.edu/wiki/Creating_a_Snapshot_on_EC2 | ||
| + | * http://genome.sph.umich.edu/wiki/GotCloud:_Reference_Files (<code>FA_REF</code> has since been renamed.) | ||
Revision as of 23:49, 7 January 2016
Organization of the GotCloud pages on this wiki
The main page is http://genome.sph.umich.edu/wiki/GotCloud .
Setup instructions:
- http://genome.sph.umich.edu/wiki/GotCloud:_Binary_Releases
- http://genome.sph.umich.edu/wiki/GotCloud:_Source_Releases
- http://genome.sph.umich.edu/wiki/GotCloud:_Reference_Files
- http://genome.sph.umich.edu/wiki/AWS_Resources
Documentation of steps in the GotCloud pipeline:
- http://genome.sph.umich.edu/wiki/GotCloud:_Genetic_Reference_and_Resource_Files (documentation and instructions)
- http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline
- http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Pipeline
- http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Options
- http://genome.sph.umich.edu/wiki/GotCloud:_Filters
Configuration:
- http://genome.sph.umich.edu/wiki/Configure_GotCloud (mainly covers
BATCH_OPTS)
Tutorials:
Pages for developers:
- http://genome.sph.umich.edu/wiki/Releasing_GotCloud
- http://genome.sph.umich.edu/wiki/Creating_an_AMI_on_EC2
Event-specific pages:
- http://genome.sph.umich.edu/wiki/Tutorial:_GotCloud_UW_CMG
- http://genome.sph.umich.edu/wiki/Tutorial:_EMMAX_GotCloud_STOM
Pages that ought to be hidden or deleted:
- http://genome.sph.umich.edu/wiki/GotCloud:_RedHat_Package
- http://genome.sph.umich.edu/wiki/Tutorial:_GotCloud
- http://genome.sph.umich.edu/wiki/AWS_Resources
- http://genome.sph.umich.edu/wiki/Amazon_Snapshot
- http://genome.sph.umich.edu/wiki/Creating_a_Snapshot_on_EC2
- http://genome.sph.umich.edu/wiki/GotCloud:_Reference_Files (
FA_REFhas since been renamed.)
