Difference between revisions of "Talk:GotCloud"

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** http://genome.sph.umich.edu/wiki/StarCluster
 
** http://genome.sph.umich.edu/wiki/StarCluster
  
Documentation of pieces of GotCloud:
+
Documentation of steps in the GotCloud pipeline:
* http://genome.sph.umich.edu/wiki/GotCloud:_Genetic_Reference_and_Resource_Files (documentation and instructions)
 
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline
 
** http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Sub-Pipelines
 
** http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Sub-Pipelines
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Pipeline
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Pipeline
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Options
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Options
 +
* http://genome.sph.umich.edu/wiki/GotCloud:_GenomeSTRiP_Pipeline
 +
* http://genome.sph.umich.edu/wiki/GotCloud:_Creating_a_New_Pipeline
 +
 +
Documentation of pieces of GotCloud:
 
* http://genome.sph.umich.edu/wiki/PileupBasedVariantCalling
 
* http://genome.sph.umich.edu/wiki/PileupBasedVariantCalling
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Filters
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Filters
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* http://genome.sph.umich.edu/wiki/Understanding_QPLOT_output
 
* http://genome.sph.umich.edu/wiki/Understanding_QPLOT_output
 
* http://genome.sph.umich.edu/wiki/Understanding_vcf-summary_output
 
* http://genome.sph.umich.edu/wiki/Understanding_vcf-summary_output
* http://genome.sph.umich.edu/wiki/GotCloud:_GenomeSTRiP_Pipeline
+
* http://genome.sph.umich.edu/wiki/GotCloud:_Genetic_Reference_and_Resource_Files (documentation and instructions)
* http://genome.sph.umich.edu/wiki/GotCloud:_Creating_a_New_Pipeline
+
 
  
 
Configuration:
 
Configuration:

Revision as of 00:21, 8 January 2016

Organization of the GotCloud pages on this wiki

The main page is http://genome.sph.umich.edu/wiki/GotCloud .

Setup instructions and documentation:

Documentation of steps in the GotCloud pipeline:

Documentation of pieces of GotCloud:


Configuration:

Tutorials:

Pages for developers:

Other:

Event-specific pages:

Pages of which some ought to be hidden, deleted, or heavily re-worked: