Difference between revisions of "Talk:GotCloud"

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(Organization of the GotCloud pages on this wiki)
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The main page is http://genome.sph.umich.edu/wiki/GotCloud .
 
The main page is http://genome.sph.umich.edu/wiki/GotCloud .
  
Setup instructions and documentation:
+
Pages that document or help with installation:
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Binary_Releases
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Binary_Releases
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Source_Releases
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Source_Releases
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** http://genome.sph.umich.edu/wiki/StarCluster
 
** http://genome.sph.umich.edu/wiki/StarCluster
  
Documentation of steps in the GotCloud pipeline:
+
Pages that document steps in the GotCloud pipeline:
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline
 
** http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Sub-Pipelines
 
** http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Sub-Pipelines
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* http://genome.sph.umich.edu/wiki/GotCloud:_Creating_a_New_Pipeline
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Creating_a_New_Pipeline
  
Documentation of pieces of GotCloud:
+
Pages that document pieces of GotCloud:
 
* http://genome.sph.umich.edu/wiki/PileupBasedVariantCalling
 
* http://genome.sph.umich.edu/wiki/PileupBasedVariantCalling
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Filters
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Filters
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* http://genome.sph.umich.edu/wiki/GotCloud:_Genetic_Reference_and_Resource_Files (documentation and instructions)
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Genetic_Reference_and_Resource_Files (documentation and instructions)
  
Configuration:
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Pages that explain configuration:
 
* http://genome.sph.umich.edu/wiki/Configure_GotCloud (mainly covers <code>BATCH_OPTS</code>)
 
* http://genome.sph.umich.edu/wiki/Configure_GotCloud (mainly covers <code>BATCH_OPTS</code>)
  
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* http://genome.sph.umich.edu/wiki/Creating_an_AMI_on_EC2
 
* http://genome.sph.umich.edu/wiki/Creating_an_AMI_on_EC2
  
Other:
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Other pages:
 
* http://genome.sph.umich.edu/wiki/GotCloud:_FAQs
 
* http://genome.sph.umich.edu/wiki/GotCloud:_FAQs
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Versions documents old versions
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Versions documents old versions

Revision as of 00:25, 8 January 2016

Organization of the GotCloud pages on this wiki

The main page is http://genome.sph.umich.edu/wiki/GotCloud .

Pages that document or help with installation:

Pages that document steps in the GotCloud pipeline:

Pages that document pieces of GotCloud:

Pages that explain configuration:

Tutorials:

Pages for developers:

Other pages:

Event-specific pages:

Pages of which some ought to be hidden, deleted, or heavily re-worked: