Talk:GotCloud
From Genome Analysis Wiki
Jump to navigationJump to searchOrganization of the GotCloud pages on this wiki
The main page is http://genome.sph.umich.edu/wiki/GotCloud .
Setup instructions:
- http://genome.sph.umich.edu/wiki/GotCloud:_Binary_Releases
- http://genome.sph.umich.edu/wiki/GotCloud:_Source_Releases
- http://genome.sph.umich.edu/wiki/GotCloud:_Reference_Files
- http://genome.sph.umich.edu/wiki/AWS_Resources
Documentation of steps in the GotCloud pipeline:
- http://genome.sph.umich.edu/wiki/GotCloud:_Genetic_Reference_and_Resource_Files (documentation and instructions)
- http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline
- http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Pipeline
- http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Options
- http://genome.sph.umich.edu/wiki/GotCloud:_Filters
Configuration:
- http://genome.sph.umich.edu/wiki/Configure_GotCloud (mainly covers
BATCH_OPTS)
Tutorials:
Pages for developers:
- http://genome.sph.umich.edu/wiki/Releasing_GotCloud
- http://genome.sph.umich.edu/wiki/Creating_an_AMI_on_EC2
Event-specific pages:
- http://genome.sph.umich.edu/wiki/Tutorial:_GotCloud_UW_CMG
- http://genome.sph.umich.edu/wiki/Tutorial:_EMMAX_GotCloud_STOM
Pages that ought to be hidden or deleted:
- http://genome.sph.umich.edu/wiki/GotCloud:_RedHat_Package
- http://genome.sph.umich.edu/wiki/Tutorial:_GotCloud
- http://genome.sph.umich.edu/wiki/AWS_Resources
- http://genome.sph.umich.edu/wiki/Amazon_Snapshot
- http://genome.sph.umich.edu/wiki/Creating_a_Snapshot_on_EC2
- http://genome.sph.umich.edu/wiki/GotCloud:_Reference_Files (
FA_REFhas since been renamed.)
