Talk:GotCloud

Organization of the GotCloud pages on this wiki

The main page is http://genome.sph.umich.edu/wiki/GotCloud .

Setup pages:

• http://genome.sph.umich.edu/wiki/GotCloud:_Binary_Releases
• http://genome.sph.umich.edu/wiki/GotCloud:_Source_Releases
• http://genome.sph.umich.edu/wiki/GotCloud:_Reference_Files
• http://genome.sph.umich.edu/wiki/AWS_Resources
  • http://genome.sph.umich.edu/wiki/Amazon_Single_Node
  • http://genome.sph.umich.edu/wiki/Amazon_Storage
  • http://genome.sph.umich.edu/wiki/StarCluster

Documentation of steps in the GotCloud pipeline:

• http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline
• http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Pipeline
• http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Options
• http://genome.sph.umich.edu/wiki/GotCloud:_Filters

Tutorials:

• http://genome.sph.umich.edu/wiki/GotCloud:_Amazon_Demo

Pages for developers:

• http://genome.sph.umich.edu/wiki/Releasing_GotCloud
• http://genome.sph.umich.edu/wiki/Creating_an_AMI_on_EC2

Event-specific pages:

• http://genome.sph.umich.edu/wiki/Tutorial:_GotCloud_UW_CMG
• http://genome.sph.umich.edu/wiki/Tutorial:_EMMAX_GotCloud_STOM
  • http://genome.sph.umich.edu/wiki/Tutorial:_EMMAX_GotCloud_STOM:_Lecture_2
  • http://genome.sph.umich.edu/wiki/Tutorial:_EMMAX_GotCloud_STOM:_Lecture_5
  • http://genome.sph.umich.edu/wiki/Tutorial:_EMMAX_GotCloud_STOM:_Lecture_6
  • http://genome.sph.umich.edu/wiki/Tutorial:_EMMAX_GotCloud_STOM:_Lecture_8

Pages that ought to be hidden or deleted:

• http://genome.sph.umich.edu/wiki/GotCloud:_RedHat_Package
• http://genome.sph.umich.edu/wiki/Tutorial:_GotCloud
• http://genome.sph.umich.edu/wiki/AWS_Resources
• http://genome.sph.umich.edu/wiki/Amazon_Snapshot
• http://genome.sph.umich.edu/wiki/Creating_a_Snapshot_on_EC2