Difference between revisions of "Tandem Repeat Concepts"
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A series of repeats that are contiguous | A series of repeats that are contiguous | ||
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| + | = Concepts = | ||
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| + | == Motif Canonical Class == | ||
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| + | === Shifting === | ||
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| + | === Reverse Complement === | ||
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| + | == Acyclicity == | ||
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| + | == Fractional counts == | ||
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| + | == Scoring == | ||
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| + | == TRF Scoring == | ||
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| + | == Normalized scoring == | ||
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= Classification = | = Classification = | ||
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* repeat tract lengfth | * repeat tract lengfth | ||
* purity | * purity | ||
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== Algorithm for Detection == | == Algorithm for Detection == | ||
Revision as of 20:35, 12 February 2016
Introduction
This page is about Tandem Repeats.
Definition
A series of repeats that are contiguous
Concepts
Motif Canonical Class
Shifting
Reverse Complement
Acyclicity
Fractional counts
Scoring
TRF Scoring
Normalized scoring
Classification
- motif length
- motif basis
- repeat tract lengfth
- purity
Algorithm for Detection
Detection of a motif in a sequence
Model free left alignment and right alignment
Model based fuzzy left alignment and right alignment
Model free fuzzy left alignment and right alignment
Implementation
This is implemented in vt.
Citation
Maintained by
This page is maintained by Adrian.
