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Introduction

This page is about Tandem Repeats.

Definition

A series of repeats that are contiguous

Concepts

Motif Canonical Class

Shifting

Reverse Complement

Acyclicity

Fractional counts

Scoring

TRF Scoring

Normalized scoring

Classification

motif length
motif basis
repeat tract lengfth
purity

Algorithm for Detection

Detection of a motif in a sequence

Model free left alignment and right alignment

Model based fuzzy left alignment and right alignment

Model free fuzzy left alignment and right alignment

Implementation

This is implemented in vt.

Citation

Maintained by

This page is maintained by Adrian.

Tandem Repeat Concepts

Contents