Difference between revisions of "Template:BamIndex"
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| − | {{{hdr|===}}} Bam Index File (<code>--bamIndex</code>) {{{hdr|===}}} | + | {{{hdr|===}}} Bam Index File ({{#if: {{{noParam|}}} | {{{noParam}}} argument|<code>{{{param|--bamIndex}}}</code>}}) {{{hdr|===}}} |
| − | Use <code>--bamIndex</code> followed by your file name to specify the BAM index file to use for reading the BAM file. | + | {{#if: {{{noParam|}}} | The {{{noParam}}} argument is the name of the BAM index file to use for reading the BAM file.|Use <code>{{{param|--bamIndex}}}</code> followed by your file name to specify the BAM index file to use for reading the BAM file.}} |
| − | If this file is required but not specified, it will use the input file name + ".bai". | + | {{#if: {{{required|}}} | |If this file is required but not specified, it will use the input file name + ".bai".}} |
Latest revision as of 17:46, 6 January 2014
Bam Index File (--bamIndex)
Use --bamIndex followed by your file name to specify the BAM index file to use for reading the BAM file.
If this file is required but not specified, it will use the input file name + ".bai".
