Difference between revisions of "Template:SeqShopRemoteEnv"
From Genome Analysis Wiki
Jump to navigationJump to search (Created page with "=== Setup your run environment === Environment variables will be used throughout the tutorial. We recommend that you setup these variables so you won't have to modify every ...") |
|||
Line 20: | Line 20: | ||
<div class="mw-collapsible-content"> | <div class="mw-collapsible-content"> | ||
::<pre>setenv GC ~/seqshop/gotcloud setenv SS ~/seqshop/example setenv OUT ~/seqshop/output</pre> | ::<pre>setenv GC ~/seqshop/gotcloud setenv SS ~/seqshop/example setenv OUT ~/seqshop/output</pre> | ||
− | |||
− | |||
− | |||
</div> | </div> | ||
</div> | </div> |
Latest revision as of 21:05, 10 December 2014
Setup your run environment
Environment variables will be used throughout the tutorial.
We recommend that you setup these variables so you won't have to modify every command in the tutorial.
- Point to where you installed GotCloud
- Point to where you installed the seqshop files
- Point to where you want the output to go
- Using bash (replace the paths below with the appropriate paths):
export GC=~/seqshop/gotcloud export SS=~/seqshop/example export OUT=~/seqshop/output
- Using tcsh (replace the paths below with the appropriate paths):
setenv GC ~/seqshop/gotcloud setenv SS ~/seqshop/example setenv OUT ~/seqshop/output