Difference between revisions of "Template:SeqShopRemoteEnv"

From Genome Analysis Wiki
Jump to navigationJump to search
(Created page with "=== Setup your run environment === Environment variables will be used throughout the tutorial. We recommend that you setup these variables so you won't have to modify every ...")
 
 
Line 20: Line 20:
 
<div class="mw-collapsible-content">
 
<div class="mw-collapsible-content">
 
::<pre>setenv GC ~/seqshop/gotcloud&#10;setenv SS ~/seqshop/example&#10;setenv OUT ~/seqshop/output</pre>
 
::<pre>setenv GC ~/seqshop/gotcloud&#10;setenv SS ~/seqshop/example&#10;setenv OUT ~/seqshop/output</pre>
</div>
 
</div>
 
 
 
</div>
 
</div>
 
</div>
 
</div>

Latest revision as of 21:05, 10 December 2014

Setup your run environment

Environment variables will be used throughout the tutorial.

We recommend that you setup these variables so you won't have to modify every command in the tutorial.

  1. Point to where you installed GotCloud
  2. Point to where you installed the seqshop files
  3. Point to where you want the output to go
Using bash (replace the paths below with the appropriate paths):
export GC=~/seqshop/gotcloud
export SS=~/seqshop/example
export OUT=~/seqshop/output
Using tcsh (replace the paths below with the appropriate paths):
setenv GC ~/seqshop/gotcloud
setenv SS ~/seqshop/example
setenv OUT ~/seqshop/output