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samtools pileup -g -T 1 -f ref.fa my.bam > my.glf
samtools pileup -g -T 1 -f ref.fa my.bam > my.glf
Note: you will need the reference fasta file ref.fa to create glf file from bam file.
== How to Run ==
== How to Run ==
== Important Filters ==
== Important Filters ==
