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=== total depth filter ===
=== total depth filter ===
For the 1000 Genomes Project (average depth per individual ~4X), we have found it useful to exclude sites with average total depth per individual < 0.5X or > 10X.
For the 1000 Genomes Project (average depth per individual ~4X), we have found it useful to exclude sites with average total depth per individual < 0.5X or > 20X.
=== coverage filter ===
=== coverage filter ===
