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(2) Check out example files and command lines under examples/thunder/ in the thunder package [https://www.sph.umich.edu/csg/yli/thunder/thunder.V010.source.tgz thunder_glf_freq].
(2) Check out example files and command lines under examples/thunder/ in the thunder package [https://www.sph.umich.edu/csg/yli/thunder/thunder.V010.source.tgz thunder_glf_freq].
== Ligate Haplotypes ==
Please use [http://www.sph.umich.edu/csg/yli/ligateHap.V004.tgz ligateHaplotypes].
== Important Filters ==
== Important Filters ==
