TinySimulator

The tinySimulator is a small and (somewhat) memory efficient forward simulator. It simulates DNA sequences over time, allowing for the possibility of mutation, recombination, and negative selection.

How it Works

Each DNA sequence is represented by a sorted array of integers, where each integer represents a site where the sequence differs from the original ancestral sequence. Each sequence is derived from two immediate ancestors through a recombination and mutation process. Optionally, sequences can be selected against.

Source Code

To download program source code, follow this link.