Difference between revisions of "Tutorial: EMMAX GotCloud STOM"
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= STOM 2014 Workshop - Practical Sessions = | = STOM 2014 Workshop - Practical Sessions = | ||
| − | Welcome to Hyun Min Kang's practical session guide page for STOM 2014 workshop. If you do not know what STOM 2014 workshop is please follow | + | Welcome to Hyun Min Kang's practical session guide page for STOM 2014 workshop. If you do not know what STOM 2014 workshop is please follow http://bibs.snu.ac.kr/board/index.php?catid=201&bcid=344 |
This page is intended to supplement the slides presented in the practical sessions of STOM 2014 workshop by facilitating easy copy-and paste of commands illustrated in the example, in the case the speed of the lecture is too fast for you. | This page is intended to supplement the slides presented in the practical sessions of STOM 2014 workshop by facilitating easy copy-and paste of commands illustrated in the example, in the case the speed of the lecture is too fast for you. | ||
| Line 7: | Line 7: | ||
This page only covers lecture 2, 5, 6, 8 that are taught by Hyun Min Kang. | This page only covers lecture 2, 5, 6, 8 that are taught by Hyun Min Kang. | ||
| − | + | Here I assume that | |
| + | * The audience has basic knowledge of Unix system, basic utilities, and pipes | ||
| + | * The audience has the account in the cluster system and know how to access to the resources presented here | ||
| − | + | Note that some commands can be very long and may go farther than the browser's width | |
| − | |||
| − | |||
| − | + | == Lecture 2 : Genomic Control, PCA, EMMAX == | |
| − | + | ||
| − | + | Please see [[Tutorial:_EMMAX_GotCloud_STOM:_Lecture_2 | Page for Practice 2 ]] | |
| + | |||
| + | == Lecture 5 : GotCloud Alignment Pipeline == | ||
| + | |||
| + | Please see [[Tutorial:_EMMAX_GotCloud_STOM:_Lecture_5 | Page for Practice 5 ]] | ||
| + | |||
| + | == Lecture 6 : GotCloud Variant Calling Pipeline + samtools == | ||
| + | |||
| + | Please see [[Tutorial:_EMMAX_GotCloud_STOM:_Lecture_6 | Page for Practice 6 ]] | ||
| + | |||
| + | == Lecture 8 : Sequence-based association using EPACTS == | ||
| + | |||
| + | Please see [[Tutorial:_EMMAX_GotCloud_STOM:_Lecture_8 | Page for Practice 8 ]] | ||
Latest revision as of 10:56, 6 January 2014
STOM 2014 Workshop - Practical Sessions
Welcome to Hyun Min Kang's practical session guide page for STOM 2014 workshop. If you do not know what STOM 2014 workshop is please follow http://bibs.snu.ac.kr/board/index.php?catid=201&bcid=344
This page is intended to supplement the slides presented in the practical sessions of STOM 2014 workshop by facilitating easy copy-and paste of commands illustrated in the example, in the case the speed of the lecture is too fast for you.
This page only covers lecture 2, 5, 6, 8 that are taught by Hyun Min Kang.
Here I assume that
- The audience has basic knowledge of Unix system, basic utilities, and pipes
- The audience has the account in the cluster system and know how to access to the resources presented here
Note that some commands can be very long and may go farther than the browser's width
Lecture 2 : Genomic Control, PCA, EMMAX
Please see Page for Practice 2
Lecture 5 : GotCloud Alignment Pipeline
Please see Page for Practice 5
Lecture 6 : GotCloud Variant Calling Pipeline + samtools
Please see Page for Practice 6
Lecture 8 : Sequence-based association using EPACTS
Please see Page for Practice 8
