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*To run the test case for the variant-calling pipeline (UMAKE), change your current directory to GotCloud's root directory, and type in the following command:
*To run the test case for the variant-calling pipeline (UMAKE), change your current directory to GotCloud's root directory, and type in the following command:
{ROOT_DIR}bin/umake.pl -test OUTPUT_DIR
{ROOT_DIR}/bin/umake.pl -test OUTPUT_DIR
where OUTPUT_DIR is the directory where you want to store the test results.
where OUTPUT_DIR is the directory where you want to store the test results.
