Tutorial: GotCloud

1. Installation

First, make sure GotCloud is installed on your system. Installation instructions here.

2. Running the Automatic Test

This verifies that GotCloud was installed correctly.

To run the test case automatically, change your current directory to gotcloud's base directory, and type in the following command:

/bin/gen_biopipeline.pl --test OUTPUT_DIR

where OUTPUT_DIR is the directory where you want to store the results.

3. Running a Sample

Now that you have verified that GotCloud has been installed correctly, you are ready to analyze a sample.