Difference between revisions of "Tutorial: RAREMETAL"
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* If RareMETAL and RareMetalWorker have not been installed on your local computer yet, please follow the following directions for installation. [http://genome.sph.umich.edu/wiki/Rare-Metal-Worker#Software_Download_and_Installation '''Install RareMetalWorker'''], [http://genome.sph.umich.edu/wiki/Rare-Metal#Software_Download_and_Installation '''Install RareMETAL'''] | * If RareMETAL and RareMetalWorker have not been installed on your local computer yet, please follow the following directions for installation. [http://genome.sph.umich.edu/wiki/Rare-Metal-Worker#Software_Download_and_Installation '''Install RareMetalWorker'''], [http://genome.sph.umich.edu/wiki/Rare-Metal#Software_Download_and_Installation '''Install RareMETAL'''] | ||
| − | * Download the example data set for RareMetalWorker to your local drive: [[Media:Raremetalworker.tutorial.tgz | RareMetalWorker example data sets]] | + | * Download the example data set for '''RareMetalWorker''' to your local drive: [[Media:Raremetalworker.tutorial.tgz | RareMetalWorker example data sets]] |
* Go to your local path where the tar ball was saved then extract | * Go to your local path where the tar ball was saved then extract | ||
tar xvzf raremetalworker.tutorial.tgz #extract | tar xvzf raremetalworker.tutorial.tgz #extract | ||
cd rmw_tutorial | cd rmw_tutorial | ||
| − | * Download the example data set for RareMetal to your local drive: [[Media:Raremetalworker.tutorial.tgz | RareMetalWorker example data sets]] | + | * Download the example data set for '''RareMetal''' to your local drive: [[Media:Raremetalworker.tutorial.tgz | RareMetalWorker example data sets]] |
* Go to your local path where the tar ball was saved then extract | * Go to your local path where the tar ball was saved then extract | ||
tar xvzf raremetal.tutorial.tgz #extract | tar xvzf raremetal.tutorial.tgz #extract | ||
Revision as of 19:06, 7 March 2013
RareMETAL Tutorial
Introduction
In this tutorial, we will show how to run RareMetalWorker and RareMETAL to perform meta analysis using example data sets.
RareMetalWorkr is the pre-processing tool to analyze data from individual studies and generate summary statistics for further meta analysis using RareMETAL.
RareMETAL is the tool to do gene-level meta analysis.
STEP 1: Install Software and Download Example Data Sets
- If RareMETAL and RareMetalWorker have not been installed on your local computer yet, please follow the following directions for installation. Install RareMetalWorker, Install RareMETAL
- Download the example data set for RareMetalWorker to your local drive: RareMetalWorker example data sets
- Go to your local path where the tar ball was saved then extract
tar xvzf raremetalworker.tutorial.tgz #extract cd rmw_tutorial
- Download the example data set for RareMetal to your local drive: RareMetalWorker example data sets
- Go to your local path where the tar ball was saved then extract
tar xvzf raremetal.tutorial.tgz #extract cd raremetal_tutorial
