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167 bytes added
, 21:44, 25 February 2016
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Line 179: |
| TTTCTTTAAAAAAAAAAGATAAAAAGGAATTTCATGG | | TTTCTTTAAAAAAAAAAGATAAAAAGGAATTTCATGG |
| | | |
− | HaplotypeCaller - a single complex variant | + | a single complex variant |
| CHROM POS REF ALT | | CHROM POS REF ALT |
| 1 124001690 C AAA | | 1 124001690 C AAA |
| | | |
− | vt - an Indel and SNP adjacent to one another | + | an Indel and SNP adjacent to one another |
| CHROM POS REF ALT | | CHROM POS REF ALT |
| 1 124001689 T TAA | | 1 124001689 T TAA |
| 1 124001690 C A | | 1 124001690 C A |
| + | |
| + | Representing it as a single complex variant enforces that both "indel" and "SNP" are always together. |
| + | Representing it as 2 separate variants allows both alleles to segregate independently. |
| | | |
| = Output = | | = Output = |