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602 bytes added
, 02:51, 20 September 2010
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| --ns parameter user defined number of kbps for the range of upstream or downstream of a gene, by default will be set t0 5 | | --ns parameter user defined number of kbps for the range of upstream or downstream of a gene, by default will be set t0 5 |
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− | == Input File Infomation == | + | == Library Compiling Guideline == |
| + | |
| + | To Compile the source code, please first re-compile the .c functions in the library folder on your local machine: |
| + | 1. Get into folder "libcsg". Type syntax "gcc -c -O2 *.cpp -D_FILE_OFFSET_BITS=32" to re-compile the c files in the library if use a 32-bit local machine |
| + | (Type "gcc -c -O2 *.cpp -D_FILE_OFFSET_BITS=64" to re-compile the .c files in the library if use a 64-bit local machine) |
| + | 2. In the same folder, type "ar -rc libcsg.a *.o" |
| + | 3. Go to the root folder, type "make clean" and "make". (Don't need to change anything in Makefile in this step) |
| + | |
| + | == Input File Information == |
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| 1. Example headlines of input VCF-format SNP file: | | 1. Example headlines of input VCF-format SNP file: |