VcfCodingSnps

From Genome Analysis Wiki
Revision as of 13:52, 20 November 2009 by Liyanmin (talk | contribs)
Jump to: navigation, search

vcfCodingSnps is a SNP annotation tool that annotates coding variants in a VCF format input file. It takes a VCF as input and generates an annotated VCF file as output.

Basic Usage Example

Here is an example of how vcfCodingSnps works:

  vcfCodingSnps -s chrom1-CHB.vcf -g genelist.txt -o annotated-chrom1-CHB.vcf