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, 21:35, 21 September 2015
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| FASTA files from these 2 sources. Just use the appropriate FASTA file that was used to generate your VCF file originally. | | FASTA files from these 2 sources. Just use the appropriate FASTA file that was used to generate your VCF file originally. |
| | | |
− | Another common issue is due to the corruption with the indexed file of the reference sequence, say for a reference file named | + | Another common issue is due to the corruption of the index file of the reference sequence; say for a reference file named |
| hs37d5.fa or hs37d5.fa.gz, simply delete the index file denoted by hs37d5.fa.fai or hs37d5.fa.gz.fai and run the vt command | | hs37d5.fa or hs37d5.fa.gz, simply delete the index file denoted by hs37d5.fa.fai or hs37d5.fa.gz.fai and run the vt command |
| again. A new index file will be generated automatically. | | again. A new index file will be generated automatically. |