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Vt (view source)

Revision as of 17:11, 5 October 2015

1,313 bytes removed ,  17:11, 5 October 2015
→‎Annotate Indels
Line 1,244: Line 1,244:  
      
 
      
 
     selected:        AC 0.89 0.00
 
     selected:        AC 0.89 0.00
−
    selected:        AC 0.89 0.00
   
     ********************************************
 
     ********************************************
−
     4. DETECTING REPEAT TRACT FUZZILY
+
     DETECTING REPEAT TRACT FUZZILY
 
     ++++++++++++++++++++++++++++++++++++++++++++
 
     ++++++++++++++++++++++++++++++++++++++++++++
−
     4a. Exact left/right alignment
+
     Exact left/right alignment
 
      
 
      
 
     repeat_tract              : CACACACACACACACA
 
     repeat_tract              : CACACACACACACACA
Line 1,258: Line 1,257:  
      
 
      
 
     ++++++++++++++++++++++++++++++++++++++++++++
 
     ++++++++++++++++++++++++++++++++++++++++++++
−
     4a. Fuzzy right alignment
+
     Fuzzy right alignment
−
    17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)[[User:Atks|Atks]] ([[User talk:Atks|talk]]) 17:00, 5 October 2015 (EDT)
   
      
 
      
 
     repeat motif : CA
 
     repeat motif : CA
Line 1,287: Line 1,285:  
                                                                                               oo++oo++oo++oo++oo++RRRRR  
 
                                                                                               oo++oo++oo++oo++oo++RRRRR  
 
     Read:  AGAAATGATAGTCACTTCAACAGATGGTGTTGGGAAAACTGGATTTCCACAGGCAGAACAAATGAAATGGATCCTTATCTTACAC-CACACACACACACACAAACTC  
 
     Read:  AGAAATGATAGTCACTTCAACAGATGGTGTTGGGAAAACTGGATTTCCACAGGCAGAACAAATGAAATGGATCCTTATCTTACAC-CACACACACACACACAAACTC  
−
    17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)[[User:Atks|Atks]] ([[User talk:Atks|talk]]) 17:00, 5 October 2015 (EDT)
   
      
 
      
 
     ++++++++++++++++++++++++++++++++++++++++++++
 
     ++++++++++++++++++++++++++++++++++++++++++++
−
     4b. Fuzzy left alignment
+
     Fuzzy left alignment
−
    17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)[[User:Atks|Atks]] ([[User talk:Atks|talk]]) 17:00, 5 October 2015 (EDT)
   
      
 
      
 
     QUAL+33 MATCH MISMATCH PENALTY
 
     QUAL+33 MATCH MISMATCH PENALTY
Line 1,324: Line 1,320:  
             LLLLLLoo++oo++oo++oo++oo++                                                                                 
 
             LLLLLLoo++oo++oo++oo++oo++                                                                                 
 
     Read:  ATCTTACAC-CACACACACACACACAAACTCAAAATGGATTTAAAGACTTAAATGTGAGCCTGGCAAACTTAAAACTCCTAAAATAAAACAGAAGGGAATATCTTT  
 
     Read:  ATCTTACAC-CACACACACACACACAAACTCAAAATGGATTTAAAGACTTAAATGTGAGCCTGGCAAACTTAAAACTCCTAAAATAAAACAGAAGGGAATATCTTT  
−
    17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)17:00, 5 October 2015 (EDT)[[User:Atks|Atks]] ([[User talk:Atks|talk]]) 17:00, 5 October 2015 (EDT)
   
      
 
      
 
     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
 
     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Line 1,336: Line 1,331:  
     position                        : [131949,131964]
 
     position                        : [131949,131964]
 
     reference repeat unit length    : 8
 
     reference repeat unit length    : 8
−
    longest allele length          : 4.55884e-41
   
     motif_concordance              : 1
 
     motif_concordance              : 1
 
     repeat units                    : 8
 
     repeat units                    : 8
Line 1,346: Line 1,340:  
     position                        : [131946,131964]
 
     position                        : [131946,131964]
 
     reference repeat unit length    : 19
 
     reference repeat unit length    : 19
−
    longest allele length          : 0
   
     motif_concordance              : 0.95
 
     motif_concordance              : 0.95
 
     repeat units                    : 19
 
     repeat units                    : 19
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Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/13784"

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